Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34880 455 / 5e-156 Amidase family protein (.1) AT5G07360 84 / 7e-17 Amidase family protein (.1.2) AT3G25660 79 / 2e-15 Amidase family protein (.1) AT1G08980 50 / 4e-06 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027852 [exp] 910 / 0 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10025066 [exp] 503 / 5e-174 AT4G34880 484 / 3e-168 Amidase family protein (.1) Lus10002805 [exp] 473 / 1e-163 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10034477 [exp] 138 / 6e-36 AT4G34880 258 / 3e-82 Amidase family protein (.1) Lus10027854 [exp] 96 / 6e-24 AT4G34880 104 / 5e-28 Amidase family protein (.1) Lus10032519 [exp] 83 / 1e-16 AT5G07360 847 / 0.0 Amidase family protein (.1.2) Lus10043019 [exp] 82 / 6e-16 AT5G07360 858 / 0.0 Amidase family protein (.1.2) Lus10020781 [exp] 81 / 1e-15 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10007361 [exp] 76 / 4e-14 AT3G25660 795 / 0.0 Amidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169300 [exp] 673 / 0 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130400 [exp] 628 / 0 AT4G34880 489 / 1e-170 Amidase family protein (.1) Potri.009G130500 [exp] 579 / 0 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G171000 [exp] 535 / 0 AT4G34880 535 / 0.0 Amidase family protein (.1) Potri.009G130700 [exp] 517 / 1e-179 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 505 / 5e-175 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.004G169400 [exp] 429 / 4e-147 AT4G34880 419 / 1e-144 Amidase family protein (.1) Potri.015G109400 [exp] 86 / 3e-17 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.018G086350 [exp] 73 / 2e-13 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.005G070300 [exp] 63 / 4e-10 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10027853 pacid=23157029 polypeptide=Lus10027853 locus=Lus10027853.g ID=Lus10027853.BGIv1.0 annot-version=v1.0 ATGGCGAACTACGGCGGACGAATAGCTCAGTTCCTCCTCCTCCTCCTCCTCCTATCCGCAGCATTCTTCACCGTCGCCGCCTCACACTTCCCGTTCGAGG AAGCCACCGTCGACCAGATCCAGCTGGCCTTCGCCGAAAACAGTCTAACTTCCAAGCAGCTGGTCAACTTCTACCTGGACCGAATCAACGACCTCAACCC CTACCTCCGCGGCGTACTGGAGCTGAATCCGGACGCGATTCACCAAGCCGAGGAGGCCGATTCAGCAAGATCGAAGTCGGGTCGGAAGTTAGGGGATCTG CATGGCGTTCCTGTTCTGTTAAAGGACGGGATAGCGACGAAGGATCTGATGAACACGACGTGTGGATCGTACGCGCTGCTGGGATCGACGGCCGTACGTG ACGCCGGCGTAGTGAAGCGGCTTGCCGCCGAATTTGTGAACCGGCTCCGGGAAGCCGGCGCCGTCATCTTAGGGAAGGCCAGCCAGAGCGAGTGGTACCG CGTCAGGTCTTTCCAGATTCCCAACGGGTGGTCCGCCAGAGGCGGCCAAGCTGTGAATCCATACGTGGAAGGGGCAGATCCGTGCGGGTCGAGCAGCGGG TCAGCAATCTCGGTAGCTGCAAACATGGTGGCTGTGTCACTAGGGACCGAAACCGACCGTTCAATACTCTGCCCGGCTGATCACAACTCGGTCGTTGGGT TCAAACCGACAGTCGGCCTAACCAGCCGGGCCGGAGTGATTCCCGTCTCCCCTCGCCAGGACACAATCGGCTTCACTGATTCGGTCTGGTCCTGGCGAGG AGAGAGGGGAGACGAGAATCACTCCAATCCGGCAGTGATACCCGTCTCTCCTCGCCCGGACACGATTGGGCCGATATGCCGGACAGTGTCGGACGCAGTC TACGTGTTAGAGGCAATTGTTGGGTTCGACCCTCGCGACGGAGTAGCAACAAGAGAAGCATCAAAGTTCATACCTTGCGGTGGATACAAACAGTTTTTGA AAAAGGATGGGTTGAAGGGGAAAAGGATAGGCATTGTAAGAAGTCCATTTGTAGACAAGTTCAATGACTCAACCGTTTTAACTACCTTCAACCGCCACGT GGAAGTGTTCGTTCAAGAGGGTGCGACTGTTATAGACAATGTCGAGATAGCTAAGGTGGAATTTGTGCTCAACCCGTTTCAATCCGGCGAAATGGCGGTA ATGATTGCCGACTTCAAGGTTGCGATTAATCGTTACCTCAAAGAAGACCTCGTCGAATCGCCTGTGAGGTCGCTGGCTGACATCCTCGCTTTCAACGTCA ATAACCCAAAACTGGAGAAAATGGAGGAGTTCGGACAAGAACTTATGGAGGCCGCGGAGATGACGAACGGGATAGGCAAGAATGAAACGAAGGCGATTCA GTCGATGGACAATCTATCACAAGAAGGGTTCGAAGCAACGATGAAATGGCACGAGCTGGACGCACTGGTCACGGTGGGCTCGGACATTTCGTCGGTGCTA GCCATTGGTGGGTACCCTGGGATTTCCGTCCCCGCTGGGTACAGTTCCGAGGGGAAGCCGTTTGGGATCGTGTTCGGAGGGTTGAAAGGCACCGAACCTA AGCTCATTGAGGCTGCTTACTCGTTCGAGCAAGCGACGAAAGCACGTAAGCCCCCTCCTCCACACTTCTCCTCCTCCTTCCCATTGAACTCAGAGATGTA TTATTCTGCTTCGAGTTTTCTGAGTTAA
AA sequence Show only first row Show all	>Lus10027853 pacid=23157029 polypeptide=Lus10027853 locus=Lus10027853.g ID=Lus10027853.BGIv1.0 annot-version=v1.0 MANYGGRIAQFLLLLLLLSAAFFTVAASHFPFEEATVDQIQLAFAENSLTSKQLVNFYLDRINDLNPYLRGVLELNPDAIHQAEEADSARSKSGRKLGDL HGVPVLLKDGIATKDLMNTTCGSYALLGSTAVRDAGVVKRLAAEFVNRLREAGAVILGKASQSEWYRVRSFQIPNGWSARGGQAVNPYVEGADPCGSSSG SAISVAANMVAVSLGTETDRSILCPADHNSVVGFKPTVGLTSRAGVIPVSPRQDTIGFTDSVWSWRGERGDENHSNPAVIPVSPRPDTIGPICRTVSDAV YVLEAIVGFDPRDGVATREASKFIPCGGYKQFLKKDGLKGKRIGIVRSPFVDKFNDSTVLTTFNRHVEVFVQEGATVIDNVEIAKVEFVLNPFQSGEMAV MIADFKVAINRYLKEDLVESPVRSLADILAFNVNNPKLEKMEEFGQELMEAAEMTNGIGKNETKAIQSMDNLSQEGFEATMKWHELDALVTVGSDISSVL AIGGYPGISVPAGYSSEGKPFGIVFGGLKGTEPKLIEAAYSFEQATKARKPPPPHFSSSFPLNSEMYYSASSFLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	0	1
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	2.6	0.9127
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	4.5	0.8899
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	5.2	0.8599
AT4G39880			Ribosomal protein L23/L15e fam...		Lus10024048 [exp]	6.9	0.8362
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	8.0	0.8625
AT3G15000			cobalt ion binding (.1)		Lus10032619 [exp]	8.7	0.8671
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	9.2	0.8649
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	9.3	0.8315
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	10.2	0.8730
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	10.8	0.8691

Compare expression of checked genes

Lus10027853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.