Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58190 264 / 2e-74 AtRLP9 receptor like protein 9 (.1.2) AT1G74190 245 / 5e-68 AtRLP15 receptor like protein 15 (.1) AT2G25470 238 / 1e-65 AtRLP21 receptor like protein 21 (.1) AT3G53240 234 / 2e-64 AtRLP45 receptor like protein 45 (.1) AT5G49290 221 / 7e-60 ATRLP56 receptor like protein 56 (.1) AT1G74170 212 / 1e-56 AtRLP13 receptor like protein 13 (.1) AT1G07390 204 / 2e-54 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 204 / 3e-54 AtRLP14 receptor like protein 14 (.1) AT1G54470 199 / 2e-52 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT4G04220 181 / 5e-47 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 1158 / 0 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030068 [exp] 377 / 3e-116 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10029288 [exp] 313 / 1e-99 AT1G07390 129 / 8e-34 receptor like protein 1 (.1.2.3) Lus10006948 [exp] 191 / 2e-50 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10019693 [exp] 187 / 1e-49 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10016402 [exp] 181 / 3e-47 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10024721 [exp] 177 / 1e-45 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10016340 [exp] 177 / 2e-45 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10019248 [exp] 177 / 3e-45 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145512 [exp] 474 / 4e-152 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.018G117927 [exp] 461 / 1e-145 AT1G07390 429 / 3e-132 receptor like protein 1 (.1.2.3) Potri.006G061300 [exp] 457 / 2e-145 AT2G25470 333 / 4e-99 receptor like protein 21 (.1) Potri.001G065300 [exp] 449 / 3e-143 AT1G58190 390 / 4e-120 receptor like protein 9 (.1.2) Potri.018G144300 [exp] 449 / 2e-142 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.018G148000 [exp] 444 / 9e-141 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.018G145516 [exp] 442 / 5e-140 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.018G144700 [exp] 441 / 4e-139 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.001G065327 [exp] 438 / 3e-138 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.001G063909 [exp] 432 / 5e-136 AT1G74190 333 / 3e-99 receptor like protein 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10027856 pacid=23156996 polypeptide=Lus10027856 locus=Lus10027856.g ID=Lus10027856.BGIv1.0 annot-version=v1.0 ATGGAGTGGAAAGGCTCCGAGGGTTGTTTGGAGAGTGAGAGAATTGGTCTCTTGAATATCAATGCTTATCTCCAAGATTATTCTGTTCACAGGCTTCCTT GGAGTTTGAAATCTGATTTTGATGATTGTTGTGATTGGCAAGGAGTCGAGTGTAATATCGTCACTGGGAGAGTTACTTCTCTCGATATCAATGAATTTAT GTATCGTACTATTGATTATTATAGATTTGGTTATGACACTAGAGGCTCTAAAGAGTTGCGCTTGAATGCCTCTTTGTTCATACCTTTTCAAGAATTAACA AGTCTTTCACTCAATGATATCAACATGGTGGGTTGCCTCGAGAATGAAGGATTCGAAAAGTTGTCAGCACTTGTTCATTTGGAAATTTTGGATTTGGAGG ACAATATGATAGATAATAATATATTGTCATCATTGAGCACTCTTTCCTCGTTGAAGTATTTGATACTTGGTGGAAATAACTTCACAACACAAGCTAAAGG GTTTGAAGAAATTTCAAACCTTAGAAACTTGGAGTCCTTGAACTTAGGGTACAATAATTTGGGAAACAACATTCTACCGTATTTAAATGGCATGTCCTCT TTAAAGACATTGAAGCTCCGCGTTGCAAGCTTAAATGGAACAATTAATATCCAAGATTTAGAAGCGTTGAGGCAATTAGAGGCGATCAATTTACGTGGAA ACGATATTTTATTGAAAGGGTTGACAATGTTCAGCAATTTGAAAGAACTTATAATTGATGCAGCCAGTCTTTGTGAACCTCAAGAGATTTCTTGGATGAC GAGACTGGAAGAAGTATGGTTATTTAAATTCGTAATGTCCGAAAATATTACATTACTTGAAGAACTCTCAACAATCTCTTCCCTGAAAGTTCTGAAGTTT TTGGATTCAAACATCGATTCTAAAGGATGGCCAATTGGGTTGAAGAAGTTGCAAAATCTAACCATTCAAGATTCGATCATACACGGCGACTTTCTGTACA CTGTTGGAACCGTAATGACCAATCTCAAGAGTTTGCAAATAGGGAATTCGTCTCTCCAATCAACTATTTCTCCAGGTTTGTGCAACTTACAGAATCTCCA CGTACTGGACCTTAGCCATAATTATCTGATTGGCGAGCTACCACAGTGCTTATCGAACTTGACTTCACTTCAATCCATTGACATTTCCTACAATGGATTA CAAGGAAATATCTCTGAGTCCTCTCCCCTTGCCAAACTATTCTGCTTAGAATCTATTGTCATATCTAGCAATGGATTCAGAATCCCGCTCTCACTCTCCC CCTTCTTCAATCATTCTCGTCTTCAATCCTTTTATGGATATGAAAATCAAGAGACATATGAAGACCATCATCCATGGATGAAACATCAACCACGTTTTCA GCTAAGACATTTTGTCCTCTCTTCGAGACATAATCATGGTGGTGGATTTGTTGGAAGGCTTCCAAGATTTCTTTATGATCAAAGTTTGGAACAACTTTAT ATAAAAGACACCAAACTGGAACCCCCAAATTACCTTCATCCTTCTCATGAAAAACTATCCTTCTTAGATATTTCGCATAACAACATCCATGGAACAATTC CACCACATATTTGCACAATATTTCCAAGCTTGGTTGATTTAAGCTTCGGCGACAACAAGCTAATTGGTAGTTTACCTGCGCAGTTATCAAATTGCTCTTG CTTAGAAGGCTTAGATGTTAGTAACAATGGCCTTTCTGGTGAGATTCCAATGCAATTTTGGAACACATCTCGGTTTCTTTTTATAGACCTATCGAGGAAT CAACTGTCAGGAAGTTTATCATCAACATTCATCTCCCCATGGATATATGAAGTTAATTTGTCTAGAAATCGACTTACAGCCTTACCATCGAGAGAAGATC AGGGAATATTCTCTACCAGAGACTACAATTTACGGGTTCTGAATCTTAGCAATAACCGTTTCAGCGGTACTGTTCCCAAATGGATCGTTGGCTTTCCTCG GTTGACTTATCTCTCTCTGAACAACAATGGATTTTCGGGTGAATTTGTGATGGCGTTTTGTTTTGAACGATTCAAGATGATTGATGTTTCTCATAACAAT CTATCTGGGGATCTTGCCCCTGCATTCACATCCACTAATAGCTGCTGTTACGAAATGCTCAATGTAGAACCTGTCCTGCGTTCGGGTTTGGATTTTATTA CCAAGACGCACCTTTATACTTATCGAGGAAAACCACTTGCATTAATGTGTGGGATGGATTTCTCCAGCAACAAGTTCACGGGAGAGATTCCTCCTCAAAT TGGTCTCAAGTTCATATACCTTAAGCTCCTCAACTTATCGTACAACCAGCTTGAAGGACAAATTCCATCATCTTTTTCAAACCTGCACCATATTGAAAGT TTGGATCTTTCTCACAACAACTTAAGCGGAAAGATCCCCCCTCAACTCACCGAGCTTACCTCCCTTTCAGTCTTCGACATGGCATACAACAATTTGTCTG GAAAGTGTCCTAAATTTACTGCACAGTTCGGTACATTTAATCAGGACAGCTATCGGGGGAATCCATTTCTGTGTTGTACTTTTCCAATACAAACACGAGA ACCACTATTACCGCAAACAACTTCTCATGATGATGACAAAGGAGAGTTCATTGACATGGAGGCATTCTATGCAAGCGGTGGAGTGACATGTGTTATGACA ATGTTGACAATTACCGTGCTTTTATATATTAACCCTCTTTGGAGACAAGTATGGTTTTATTATGTAAAAATTGTCGTAGGGAGTAGTTATTATTTTGTGG TGGATAATCTTCCTCTGTCTGCAAAATATAAGATGTGGGAACTTCGGTTGTAA
AA sequence Show only first row Show all	>Lus10027856 pacid=23156996 polypeptide=Lus10027856 locus=Lus10027856.g ID=Lus10027856.BGIv1.0 annot-version=v1.0 MEWKGSEGCLESERIGLLNINAYLQDYSVHRLPWSLKSDFDDCCDWQGVECNIVTGRVTSLDINEFMYRTIDYYRFGYDTRGSKELRLNASLFIPFQELT SLSLNDINMVGCLENEGFEKLSALVHLEILDLEDNMIDNNILSSLSTLSSLKYLILGGNNFTTQAKGFEEISNLRNLESLNLGYNNLGNNILPYLNGMSS LKTLKLRVASLNGTINIQDLEALRQLEAINLRGNDILLKGLTMFSNLKELIIDAASLCEPQEISWMTRLEEVWLFKFVMSENITLLEELSTISSLKVLKF LDSNIDSKGWPIGLKKLQNLTIQDSIIHGDFLYTVGTVMTNLKSLQIGNSSLQSTISPGLCNLQNLHVLDLSHNYLIGELPQCLSNLTSLQSIDISYNGL QGNISESSPLAKLFCLESIVISSNGFRIPLSLSPFFNHSRLQSFYGYENQETYEDHHPWMKHQPRFQLRHFVLSSRHNHGGGFVGRLPRFLYDQSLEQLY IKDTKLEPPNYLHPSHEKLSFLDISHNNIHGTIPPHICTIFPSLVDLSFGDNKLIGSLPAQLSNCSCLEGLDVSNNGLSGEIPMQFWNTSRFLFIDLSRN QLSGSLSSTFISPWIYEVNLSRNRLTALPSREDQGIFSTRDYNLRVLNLSNNRFSGTVPKWIVGFPRLTYLSLNNNGFSGEFVMAFCFERFKMIDVSHNN LSGDLAPAFTSTNSCCYEMLNVEPVLRSGLDFITKTHLYTYRGKPLALMCGMDFSSNKFTGEIPPQIGLKFIYLKLLNLSYNQLEGQIPSSFSNLHHIES LDLSHNNLSGKIPPQLTELTSLSVFDMAYNNLSGKCPKFTAQFGTFNQDSYRGNPFLCCTFPIQTREPLLPQTTSHDDDKGEFIDMEAFYASGGVTCVMT MLTITVLLYINPLWRQVWFYYVKIVVGSSYYFVVDNLPLSAKYKMWELRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Lus10027856 [exp]	0	1

Compare expression of checked genes

Lus10027856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.