Plant FIBer expression Database

Lus10027857 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49820 274 / 3e-92 MTK1, ATMTK 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002806
[exp]
268 / 4e-90 AT1G49820 558 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G094800
[exp]
283 / 7e-96 AT1G49820 686 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Potri.001G299700
[exp]
279 / 3e-94 AT1G49820 653 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
PFAM info
Representative CDS sequence
>Lus10027857 pacid=23156878 polypeptide=Lus10027857 locus=Lus10027857.g ID=Lus10027857.BGIv1.0 annot-version=v1.0
ATGGCGTCGTTCACGGAGTTCAGGCCGCTGGACGAGAAATCACTGATCGAATATATCAGAGCAACCCCAGCTTTGTCGGAGAAGCTCGGGGACGACGTCG
ATCAGATGAAGATCAAAGAAGTCGGAGATGGGAATTTGAATTTCGTATACATCCTCACTTCCCCAGCTGGGTCCTTAGTCATCAAGCAGGCACTTCCATA
TGTACGTTGTATTGGAGAATCTTGGCCGATGACAAAGGAAAGGGCATATTTCGAAGCAACCGTGCTTAAAGAGCACGGACGATTGTCTCCCGACCACGTT
CCAGAACTCTATCATTTCGACCGCACAATGTCTTTGATCGGCATGAGGTACTTGGAACCTCCGCATATAATCCTGCGAAAAGGACTCATCGCCGGAATCA
ATTACCCTTTACTAGCTGATCACATATCAGATTACATGGCCAACACTCTTTACTATACTTCCCTCATTCATCGCACCACCACCGAGCACAAACGAGCCGG
CGAGCTCTCCGTATAG
AA sequence
>Lus10027857 pacid=23156878 polypeptide=Lus10027857 locus=Lus10027857.g ID=Lus10027857.BGIv1.0 annot-version=v1.0
MASFTEFRPLDEKSLIEYIRATPALSEKLGDDVDQMKIKEVGDGNLNFVYILTSPAGSLVIKQALPYVRCIGESWPMTKERAYFEATVLKEHGRLSPDHV
PELYHFDRTMSLIGMRYLEPPHIILRKGLIAGINYPLLADHISDYMANTLYYTSLIHRTTTEHKRAGELSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Lus10027857
[exp]
0 1
AT5G50210 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEAT... Lus10043314
[exp]
2.0 0.9124
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10013806
[exp]
4.5 0.9175
AT5G03290 IDH-V isocitrate dehydrogenase V (.1... Lus10026519
[exp]
5.3 0.9276
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10028333
[exp]
10.9 0.8874
AT5G13430 Ubiquinol-cytochrome C reducta... Lus10035118
[exp]
11.5 0.9155
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Lus10027858
[exp]
17.7 0.9061
AT1G67330 Protein of unknown function (D... Lus10015780
[exp]
18.2 0.9027
AT3G10920 MSD1, MEE33, AT... MATERNAL EFFECT EMBRYO ARREST ... Lus10034222
[exp]
19.3 0.8782
AT1G03280 Transcription factor TFIIE, al... Lus10019269
[exp]
20.1 0.8793
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10037680
[exp]
20.3 0.8926

Lus10027857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.