Plant FIBer expression Database

Lus10027858 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G49820 260 / 1e-86 MTK1, ATMTK 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002806
[exp]
345 / 2e-120 AT1G49820 558 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G094800
[exp]
281 / 5e-95 AT1G49820 686 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
Potri.001G299700
[exp]
276 / 6e-93 AT1G49820 653 / 0.0 5-methylthioribose kinase 1, S-methyl-5-thioribose kinase (.1)
PFAM info
Representative CDS sequence
>Lus10027858 pacid=23157098 polypeptide=Lus10027858 locus=Lus10027858.g ID=Lus10027858.BGIv1.0 annot-version=v1.0
ATGGTTACACCTGAGTCCACTCAAGTCATAGATCCGGAATTCGGATTCTATGGTCCGATGGGGTTTGACATTGGTGCATTCATCGGCAACTTGATCCTAG
CTTACTATGCTCAAGATGGCCATGCCGATGGCAAAAATGACCGAAAAGCGTACAAAGAGTGGATTTTGACGACAATCCACGACACGTGGACCCTATTTGA
GAAGAAATTCACTTCACTGTGGAACCATCATAAAGATGGAGAAGGAGAAGCTTATCTGCCAGAAATTTACAACAAACTTGAAGTTCAGCAGCTTGTGCAG
AAGAAGTTCTTGACAGATTTGTTCCATGACAGCCTCGGCTTCGCTGCCGCCAAAATGATCAGGAGGATTGTTGGAGTCGCTCATGTCGAGGATCTGGAAT
CCATCGAAGATGCTAGACTACGAGCGAACTGTGAGAGGCGAGCTCTAGAGTTTGCGAAATCACTACTGAAGGGAAGGCGTAACTTCCAGTCCATTGCTGA
AGTCGTGTCGGCCATTCAGCAGCTGTGA
AA sequence
>Lus10027858 pacid=23157098 polypeptide=Lus10027858 locus=Lus10027858.g ID=Lus10027858.BGIv1.0 annot-version=v1.0
MVTPESTQVIDPEFGFYGPMGFDIGAFIGNLILAYYAQDGHADGKNDRKAYKEWILTTIHDTWTLFEKKFTSLWNHHKDGEGEAYLPEIYNKLEVQQLVQ
KKFLTDLFHDSLGFAAAKMIRRIVGVAHVEDLESIEDARLRANCERRALEFAKSLLKGRRNFQSIAEVVSAIQQL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Lus10027858
[exp]
0 1
AT1G25380 ATNDT2 NAD+ transporter 2, ARABIDOPSI... Lus10003041
[exp]
1.0 0.9484
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Lus10002806
[exp]
1.7 0.9466
AT2G27450 CPA, ATNLP1, NL... nitrilase-like protein 1 (.1.2... Lus10004862
[exp]
2.6 0.9380
AT5G40650 SDH2-2 succinate dehydrogenase 2-2 (.... Lus10022319
[exp]
3.9 0.9423
AT1G67330 Protein of unknown function (D... Lus10015780
[exp]
5.5 0.9335
AT4G15490 UGT84A3 UDP-Glycosyltransferase superf... Lus10019809
[exp]
5.5 0.9126
Lus10018893
[exp]
9.5 0.9478
AT1G25370 Protein of unknown function (D... Lus10038942
[exp]
15.0 0.9271
AT1G49820 MTK1, ATMTK 5-methylthioribose kinase 1, S... Lus10027857
[exp]
17.7 0.9061
AT1G72330 ALAAT2 alanine aminotransferase 2 (.1... Lus10037455
[exp]
25.1 0.9262

Lus10027858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.