Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57240 185 / 4e-58 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT3G57270 184 / 8e-58 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 180 / 2e-56 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT4G16260 179 / 1e-55 Glycosyl hydrolase superfamily protein (.1) AT5G56590 154 / 5e-45 O-Glycosyl hydrolases family 17 protein (.1) AT2G27500 137 / 9e-40 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G77780 135 / 8e-39 Glycosyl hydrolase superfamily protein (.1) AT2G01630 135 / 1e-38 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G20340 134 / 2e-38 BG5 beta-1,3-glucanase 5 (.1) AT5G20390 134 / 3e-38 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002807 [exp] 343 / 3e-120 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027860 [exp] 271 / 1e-91 AT3G57260 322 / 4e-109 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) Lus10014108 [exp] 224 / 7e-71 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019801 [exp] 216 / 3e-70 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 211 / 3e-68 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 196 / 1e-62 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019800 [exp] 189 / 4e-61 AT3G57270 238 / 1e-77 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10016883 [exp] 191 / 1e-60 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10031037 [exp] 164 / 5e-50 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046100 [exp] 206 / 3e-66 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 202 / 8e-65 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 193 / 2e-61 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 191 / 1e-60 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.010G143166 [exp] 188 / 2e-59 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.001G255100 [exp] 187 / 4e-59 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 184 / 1e-57 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.009G050401 [exp] 158 / 1e-48 AT4G16260 263 / 2e-87 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 159 / 2e-48 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 147 / 1e-43 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10027859 pacid=23156927 polypeptide=Lus10027859 locus=Lus10027859.g ID=Lus10027859.BGIv1.0 annot-version=v1.0 ATGGGCAATACATACCCGCCGGACCAAGGCGCTTTCAACCAAGCTTATATGGGCCTTCTAAGGCCCATATTGGACTTTTTAGCGGCCAATCAATCCCCGA TGCTATTAAACTTGTACCCGTTTTTCAGCCACCGTGACAACCCGGTTCAAGTGCTACTTAACTATGCTCTATTCAGAGGTCCGCCCGACCAAGGAACCGG GTACGAAAACCTTTTCTTTGCAATGTTGGATTCCACGTACTATGCCCTGGAACGAGAAGGAAAGGAGAGTCTGAACATCGTAGTGTCGGAGAGCGGGTGG CCGTCGGCAGGAGGAGGGGCTCCGACAACAGTGGATAATGCAAGGACTTACAACAACAATTTGGTACAACAGGTTAAAAGAGGGACACCAAAGCGTCCCG GTAGACCAATTGAGACGTATATTTTCGCAATGTTTGACGAAGGGGACAAGGGTGGGGAACCGCTGGAGAAACATTTTGGGCTGTTTAGTCCTAATAGGCA GCCAAAGTATCCGATGAGGTTCGACTAA
AA sequence Show only first row Show all	>Lus10027859 pacid=23156927 polypeptide=Lus10027859 locus=Lus10027859.g ID=Lus10027859.BGIv1.0 annot-version=v1.0 MGNTYPPDQGAFNQAYMGLLRPILDFLAANQSPMLLNLYPFFSHRDNPVQVLLNYALFRGPPDQGTGYENLFFAMLDSTYYALEREGKESLNIVVSESGW PSAGGGAPTTVDNARTYNNNLVQQVKRGTPKRPGRPIETYIFAMFDEGDKGGEPLEKHFGLFSPNRQPKYPMRFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10027859 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	3.5	0.8762
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10008523 [exp]	5.2	0.8572
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034279 [exp]	10.7	0.8384
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10003942 [exp]	12.4	0.8632
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	17.5	0.8379
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005016 [exp]	18.6	0.8393
AT1G23850			unknown protein		Lus10030860 [exp]	19.1	0.8420
AT5G10770			Eukaryotic aspartyl protease f...		Lus10000265 [exp]	20.5	0.8058
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10033041 [exp]	22.9	0.7948
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	25.7	0.7736

Compare expression of checked genes

Lus10027859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.