Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57270 320 / 3e-108 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT3G57260 314 / 4e-106 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57240 308 / 1e-103 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT4G16260 265 / 1e-86 Glycosyl hydrolase superfamily protein (.1) AT5G56590 256 / 4e-81 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 224 / 2e-70 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G29360 214 / 3e-65 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 207 / 2e-62 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 203 / 3e-62 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G20340 200 / 3e-61 BG5 beta-1,3-glucanase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002807 [exp] 512 / 0 AT3G57240 339 / 7e-116 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10019801 [exp] 391 / 3e-136 AT3G57270 367 / 6e-127 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014109 [exp] 389 / 3e-135 AT3G57270 361 / 1e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014108 [exp] 392 / 3e-133 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10014110 [exp] 322 / 2e-109 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10031037 [exp] 282 / 2e-93 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10027859 [exp] 270 / 3e-91 AT3G57240 185 / 4e-58 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 259 / 1e-84 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10035423 [exp] 241 / 3e-77 AT3G57270 266 / 3e-87 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048100 [exp] 359 / 1e-123 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057400 [exp] 358 / 2e-123 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G046100 [exp] 358 / 4e-123 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 340 / 3e-116 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.001G255100 [exp] 309 / 5e-104 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 294 / 2e-98 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 294 / 1e-97 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.009G050300 [exp] 265 / 4e-87 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 228 / 7e-72 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.018G068600 [exp] 226 / 1e-69 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10027860 pacid=23156934 polypeptide=Lus10027860 locus=Lus10027860.g ID=Lus10027860.BGIv1.0 annot-version=v1.0 ATGGGTTACCGGCCTCAATCTCCTAGAAAGAGTAGCCATTGGAGGAGCTCCAAGGTTCCAATGGCAGCCATGTTCTTGGCCATGCTACTTGCTAGCATAC ACACTACAGGTGCCCAAATTGGAGTATGCTATGGAATGCAAGGGGTCGTACCACGAGGCCCTGAAGGCATTGAACTATACAAGCAGAACAACATCCAAAG GATGCGACTCTATGACCCGGACCGAGAAGCCCTCCAAGCACTTGGGGGCTCCAACATCGAGCTCATCCTGGATGTTCCGAACGGGCAGCTCGGCTCGGTC TCGTCTAGCCAAGCCAACGCGGATTCTTGGGTCCAGACCAACGTCGCTGCTTATGGCGACGTTAAATTCAAGTACATTGCAGTTGGAAACGAGGTCGAAC CGAACAGCCCTGAGGCTCCGAGCTTGGTCGGGGCTATTGAGAATATCCAAACCGCTATCAACTCGGCCGGTCTAGGAGGCCAGGTCAAAGTCTCTACGGC CTTTAAGTACAATATCATGGGATTGACATACCCTCCAGCCCAAGGCTCTTTCAACGAAGCTTATCTAAGCCTTCTGAGGCCCATATTGGACTTTTTAGCA ACCAATCAATCCCCGATACTATTAAACTTGTACCCGTTTTTCAGCCACCGTGACAGTCCGAATACCGTGCCGCTTGACTATGCCCTATTTCGAGCTCCGG CGGATCCATCAAGCGAATACAAAAATCTTTTCGACGCGATGTTGGACGCCACATATTATGCTTTGGAAAGTGAAGGGAAGGGGAGTTTGAACATTGTGGT GTCGGAGAGCGGATGGCCTACAGAAGGAGGAGGGGACTCAACGACCATGGATAATGCAATGACTTATAACAACAATTTGGTACAACATGTTAAAGGAGGG ACACCGAAGCGGCCCGATGAGCCAATTGAGACTTATATTTTTGCAATGTTTGACGAAGGGAACAAGGGTGGGGAAGAGCTGGAGAAATATTTTGGGTTGT TTAATCCTATGAATAAGCAGCTAAAGTATGAGATGCGGTTCGACTAA
AA sequence Show only first row Show all	>Lus10027860 pacid=23156934 polypeptide=Lus10027860 locus=Lus10027860.g ID=Lus10027860.BGIv1.0 annot-version=v1.0 MGYRPQSPRKSSHWRSSKVPMAAMFLAMLLASIHTTGAQIGVCYGMQGVVPRGPEGIELYKQNNIQRMRLYDPDREALQALGGSNIELILDVPNGQLGSV SSSQANADSWVQTNVAAYGDVKFKYIAVGNEVEPNSPEAPSLVGAIENIQTAINSAGLGGQVKVSTAFKYNIMGLTYPPAQGSFNEAYLSLLRPILDFLA TNQSPILLNLYPFFSHRDSPNTVPLDYALFRAPADPSSEYKNLFDAMLDATYYALESEGKGSLNIVVSESGWPTEGGGDSTTMDNAMTYNNNLVQHVKGG TPKRPDEPIETYIFAMFDEGNKGGEELEKYFGLFNPMNKQLKYEMRFD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	0	1
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	1.4	0.9894
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	2.0	0.9872
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	2.6	0.9651
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	2.8	0.9699
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	3.2	0.9664
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	3.5	0.9706
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	4.2	0.9536
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	4.2	0.9657
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	4.9	0.9566
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	5.1	0.9443

Compare expression of checked genes

Lus10027860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.