Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15230 417 / 5e-144 ATLIP1 lipase 1 (.1) AT5G14180 221 / 2e-67 MPL1 Myzus persicae-induced lipase 1 (.1) AT1G18460 84 / 3e-17 alpha/beta-Hydrolases superfamily protein (.1) AT1G73920 81 / 3e-16 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002808 [exp] 658 / 0 AT2G15230 551 / 0.0 lipase 1 (.1) Lus10002809 [exp] 402 / 7e-140 AT2G15230 427 / 8e-151 lipase 1 (.1) Lus10038378 [exp] 245 / 2e-77 AT5G14180 377 / 2e-129 Myzus persicae-induced lipase 1 (.1) Lus10038401 [exp] 245 / 7e-77 AT5G14180 383 / 4e-131 Myzus persicae-induced lipase 1 (.1) Lus10015159 [exp] 237 / 1e-73 AT5G14180 409 / 2e-141 Myzus persicae-induced lipase 1 (.1) Lus10031523 [exp] 234 / 1e-72 AT5G14180 410 / 1e-141 Myzus persicae-induced lipase 1 (.1) Lus10023171 [exp] 233 / 4e-72 AT5G14180 358 / 3e-121 Myzus persicae-induced lipase 1 (.1) Lus10015158 [exp] 226 / 1e-69 AT5G14180 351 / 2e-118 Myzus persicae-induced lipase 1 (.1) Lus10022349 [exp] 221 / 6e-67 AT5G14180 527 / 0.0 Myzus persicae-induced lipase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094900 [exp] 474 / 1e-166 AT2G15230 564 / 0.0 lipase 1 (.1) Potri.014G159800 [exp] 258 / 5e-82 AT5G14180 422 / 3e-146 Myzus persicae-induced lipase 1 (.1) Potri.014G159700 [exp] 255 / 8e-81 AT5G14180 441 / 5e-154 Myzus persicae-induced lipase 1 (.1) Potri.014G159900 [exp] 252 / 1e-79 AT5G14180 421 / 9e-146 Myzus persicae-induced lipase 1 (.1) Potri.001G332300 [exp] 218 / 2e-66 AT5G14180 533 / 0.0 Myzus persicae-induced lipase 1 (.1) Potri.017G069700 [exp] 179 / 6e-52 AT5G14180 374 / 4e-128 Myzus persicae-induced lipase 1 (.1) Potri.012G060600 [exp] 77 / 1e-14 AT1G73920 917 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF04083 [flax] [poplar] Abhydro_lipase Partial alpha/beta-hydrolase lipase region
Representative CDS sequence Show only first row Show all	>Lus10027861 pacid=23157032 polypeptide=Lus10027861 locus=Lus10027861.g ID=Lus10027861.BGIv1.0 annot-version=v1.0 ATGAATGACGCGCACCATTTACGGAGTGGACGCGCGTGGCAGTACTCACCAACTGCCATTCAAACACCTTTCTCCAATTCTAACCACCAAATCTCCATTT TCAGCAATCCAAAGATTCTTCTCCCAAAAAACCAGAGGAGCTCCAAGCTCATCGCGCCATTTCCAAATTTCCGCACGATGACGGAGCTTCTCCTCCTCCT CCTCATCTCGTGGATCCTCCTGGTCACCGCATCCGCTGCTGCCGGCGACGAATCGGCAACTCTCCAGCTGCGAACGCCGAAGGCTAACTTGTGCGGCCAG GTCATCGGACGAGCTGGATACCCTTGCACCGAACACACTATCGAGACTACGGATGGATACTTGTTAGCTCTACAGAGGGTTTCCTCTAGGAATGGGAATT TAAGCTCGATTCGTGGTCCTCCTGTCTTGCTTCAACATGGACTCTTCATGGGAGGTGATTGCTGGTTTCTGAATTCCCCTGAGGAGTCGCTAGGCTTCAT CCTTGCAGACCAGGGTTTCGATGTATGGGTTGGAAATGTTCGTGGGACATTCTGGAGTCACGGGCATGTATCTTTATCTGAGGACGACAAGGACTTCTGG GATTGGAGTTGGCAGGAATTGGCAATGTATGACCTAGCAGCGATGATACACCACATTTATTCAGCAACAAGCTCAAAAGTTTTCCTCGTTGGTCATTCTC AGGGAACGATCATGGCTTTAGCGGCTCTCTCGCAGCCGAAAATTGTGGAAATGGTCGAAGCTGCTGCACTTTTGTGTCCAATTTCATACTTGGATCATGT AACTGCTCCTCTTGTACATAAAATGGTCACCATGCACGTTGATCAGATGGTTACTGCCATGGGCATACATCAACTGAACTTCAGAAGGTATAACTATGAG GAGAGTCGGTTCATCGGTTTTAACCGTAAGCGAATGGTCAGCGCTACTAGCATTCAGTATTCATGTCATCATACATTAAAGCTCACCTTCCCTTCCAATG CGACAGTGATTCGGAAGGGAACATTCGCACAGTACGACTACGGGACGTTCAAAAACTTGAAGGAGTACGGCCAGGCATCTCCGCCGGTGTTCGACCTGAG CCTGATACCGGACTCGTTGCCGCTGTGGATGGGGTGGATGGGGTACGGAGGTCTGGACGGGCTAGCTGACATCGACGACATGCAGCACACGCTCAAGGAG CTGCTGTGCAAGACGGAGCTGCTGTACCTGGAGAACTACGGCCACATTGATTTCCTTTTGAGCGTCAGAGGGAAAGAAGATGTTTATGACCATATTGTCG CATTTTTCAGGTCACTTGGACAGCCTATAAGCAGTGCTTAA
AA sequence Show only first row Show all	>Lus10027861 pacid=23157032 polypeptide=Lus10027861 locus=Lus10027861.g ID=Lus10027861.BGIv1.0 annot-version=v1.0 MNDAHHLRSGRAWQYSPTAIQTPFSNSNHQISIFSNPKILLPKNQRSSKLIAPFPNFRTMTELLLLLLISWILLVTASAAAGDESATLQLRTPKANLCGQ VIGRAGYPCTEHTIETTDGYLLALQRVSSRNGNLSSIRGPPVLLQHGLFMGGDCWFLNSPEESLGFILADQGFDVWVGNVRGTFWSHGHVSLSEDDKDFW DWSWQELAMYDLAAMIHHIYSATSSKVFLVGHSQGTIMALAALSQPKIVEMVEAAALLCPISYLDHVTAPLVHKMVTMHVDQMVTAMGIHQLNFRRYNYE ESRFIGFNRKRMVSATSIQYSCHHTLKLTFPSNATVIRKGTFAQYDYGTFKNLKEYGQASPPVFDLSLIPDSLPLWMGWMGYGGLDGLADIDDMQHTLKE LLCKTELLYLENYGHIDFLLSVRGKEDVYDHIVAFFRSLGQPISSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10027861 [exp]	0	1
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	2.0	0.9031
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	2.8	0.8930
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	3.0	0.8869
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	3.7	0.8501
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	4.9	0.8756
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10015231 [exp]	7.7	0.8608
AT5G36250			Protein phosphatase 2C family ...		Lus10022588 [exp]	9.1	0.8063
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Lus10006379 [exp]	10.7	0.8517
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	12.0	0.8471
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	16.6	0.8456

Compare expression of checked genes

Lus10027861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.