Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15480 381 / 2e-128 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 373 / 2e-125 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 369 / 1e-123 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 349 / 4e-116 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT2G23260 249 / 9e-78 UGT84B1 UDP-glucosyl transferase 84B1 (.1) AT2G23250 239 / 5e-74 UGT84B2 UDP-glucosyl transferase 84B2 (.1) AT2G31790 218 / 9e-66 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 213 / 1e-63 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05560 212 / 3e-63 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 211 / 7e-63 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019808 [exp] 505 / 3e-177 AT4G15480 471 / 9e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10014105 [exp] 499 / 8e-175 AT4G15480 467 / 3e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10019809 [exp] 467 / 2e-162 AT4G15490 429 / 2e-147 UDP-Glycosyltransferase superfamily protein (.1) Lus10008742 [exp] 243 / 3e-75 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006353 [exp] 234 / 1e-71 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 234 / 2e-71 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 224 / 7e-68 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 218 / 1e-65 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 216 / 1e-64 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095300 [exp] 406 / 6e-138 AT4G15480 528 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095100 [exp] 405 / 8e-138 AT4G15480 496 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095400 [exp] 405 / 2e-137 AT4G15480 488 / 2e-169 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G095500 [exp] 283 / 3e-90 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1) Potri.009G095200 [exp] 277 / 7e-88 AT2G23260 413 / 5e-141 UDP-glucosyl transferase 84B1 (.1) Potri.007G049600 [exp] 270 / 3e-85 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.017G032300 [exp] 261 / 6e-82 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032500 [exp] 250 / 5e-78 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 248 / 4e-77 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 248 / 4e-77 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10027862 pacid=23157065 polypeptide=Lus10027862 locus=Lus10027862.g ID=Lus10027862.BGIv1.0 annot-version=v1.0 ATGAGATCGGACGATGAGTCACGGATCCACGTCCTCATAGTTTGCTACCCTAGCCAGGGCCACATCAACCCGATCCTCCGTCTAGCCAACCTCCTCGCGA CACGTGGACTCCATGTTACATTCCTCATCAACAGTTCCACCGGCGCCACTATGCGACTCCCCAACAACATCCTCGATAACCATGTCCCTGTCGGCTCTGC AGGCGGTTCGATCCAGGTCGACTTCTTCGAAGATGGCCTCGAGCCGGGGGAGATCCTCAAGCGGATCCCATTCCCCCAGCTCCTGCCTTTCCTCGAACAG GTGGGGAGGAAGGCTCTCCCCGGGATCATCGAACGCCACACAAAAGCCGGTCGCCCCGTCAGCTGCCTCGTGAGCGAACCGTACTTTTCGTGGGCGTTCG AAGTGGCGTCCATGTTGGACATACCATTCGCAGCTATATGGACTCAGTCTTGTGCGTCTTTCTCGACCCAGTACCACTACCATTGTAACCTTGTCCCGTT CCCCACGCGGGAGGACCCTGAATCCGACGTCATGCTGCCTTGCATGCCCGTGCTGAAACATGATGAGATCCCGACATTCCTCCACCCCGCCACCCTGTTC CCGCCACTCCACGCCACGATAATTGGAGAGTCGAAGTTTCTAGCTGAAGTGCTGTGCATCTTCGTTGACACTTTTGTCGAACTCGAGCCCGAAATCGCGG CGCACTTGTCGACGATTTGTCACTTCATGCCTGTGGGCCCGTTGTGTCTACAGACAAGTATTTGTGGAGATCTGATGGATGCAGCAAACGACTGCATCGG CTGGCTCAACGGGAAGGAATCGTCGAAGGTGGTATACGTCTCGATGGGGACGGTCGCGTCCATGCGGCCAGAGCAGCGTTTCGAGCTGGCACACGGCCTG ATTGACTCCGGGCTACCTTTCCTATGGGTAGTCCGACCCAACCGCGAGGAGAACGAGTCTGACTTCACCCTACCTGGCGGGTTGGAAGTCAACGGGAAAG TTGTGAGGTGGGCCCCTCAAAGAGATGTGTTGGCCCACCCTGCAGTGGCATGTTTCGTGACACACTGTGGGTGGAACTCAACAATGGAAGCGATAGCTGC GGGGAAGCCAGTAGTGGCGTTCCCGGTGTTCGTGGACCAGCCCACGAACGCCAAGTTTCTGGTGGATGTCTATGGGGTCGGAGTGAGAATGAGCCGAGGA GAAGGGACCACGGTGATGAGGGATGAGGTGGCTAGCTGTCTAGCGGAAGCGACGGTGGGGCCCAAGGCGGAGGAGTTGCTGAGAAATGCAGCAAAGTGGA AGAAGAAGGCGGAGGAGGCGGTGGCGGAGGGGGGATCGTCGGAAAGTAGTGTTAAGGAGTTCGTGGAGATGGTGAAGAAGAATGTGTCTAGTAGGACATG A
AA sequence Show only first row Show all	>Lus10027862 pacid=23157065 polypeptide=Lus10027862 locus=Lus10027862.g ID=Lus10027862.BGIv1.0 annot-version=v1.0 MRSDDESRIHVLIVCYPSQGHINPILRLANLLATRGLHVTFLINSSTGATMRLPNNILDNHVPVGSAGGSIQVDFFEDGLEPGEILKRIPFPQLLPFLEQ VGRKALPGIIERHTKAGRPVSCLVSEPYFSWAFEVASMLDIPFAAIWTQSCASFSTQYHYHCNLVPFPTREDPESDVMLPCMPVLKHDEIPTFLHPATLF PPLHATIIGESKFLAEVLCIFVDTFVELEPEIAAHLSTICHFMPVGPLCLQTSICGDLMDAANDCIGWLNGKESSKVVYVSMGTVASMRPEQRFELAHGL IDSGLPFLWVVRPNREENESDFTLPGGLEVNGKVVRWAPQRDVLAHPAVACFVTHCGWNSTMEAIAAGKPVVAFPVFVDQPTNAKFLVDVYGVGVRMSRG EGTTVMRDEVASCLAEATVGPKAEELLRNAAKWKKKAEEAVAEGGSSESSVKEFVEMVKKNVSSRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	0	1
AT3G44540		FAR4	fatty acid reductase 4 (.1.2)		Lus10019187 [exp]	9.7	0.9992
AT2G24180		CYP71B6	cytochrome p450 71b6 (.1)		Lus10017697 [exp]	9.8	0.9983
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	10.7	0.9961
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10003079 [exp]	12.1	0.9825
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	13.8	0.9991
AT4G16230			GDSL-like Lipase/Acylhydrolase...		Lus10037776 [exp]	16.9	0.9991
AT4G35150			O-methyltransferase family pro...		Lus10017699 [exp]	18.1	0.9967
					Lus10039337 [exp]	19.5	0.9991
					Lus10003843 [exp]	21.8	0.9991
					Lus10004351 [exp]	23.9	0.9991

Compare expression of checked genes

Lus10027862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.