Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19440 425 / 8e-146 Pseudouridine synthase family protein (.1) AT1G78910 273 / 2e-86 Pseudouridine synthase family protein (.1) AT1G76050 79 / 9e-16 Pseudouridine synthase family protein (.1.2) AT3G52260 64 / 6e-11 Pseudouridine synthase family protein (.1.2.3) AT1G56345 61 / 7e-10 Pseudouridine synthase family protein (.1) AT5G51140 50 / 2e-06 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002811 [exp] 809 / 0 AT3G19440 445 / 1e-153 Pseudouridine synthase family protein (.1) Lus10033350 [exp] 261 / 6e-82 AT1G78910 658 / 0.0 Pseudouridine synthase family protein (.1) Lus10034804 [exp] 260 / 1e-81 AT1G78910 655 / 0.0 Pseudouridine synthase family protein (.1) Lus10017250 [exp] 77 / 8e-15 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005619 [exp] 74 / 1e-13 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10022437 [exp] 57 / 2e-08 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 54 / 1e-07 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3) Lus10040385 [exp] 50 / 2e-06 AT3G52260 488 / 2e-173 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095700 [exp] 556 / 0 AT3G19440 483 / 2e-168 Pseudouridine synthase family protein (.1) Potri.004G228200 [exp] 257 / 2e-80 AT1G78910 648 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 77 / 3e-15 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 71 / 6e-13 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.013G009300 [exp] 58 / 6e-09 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10027863 pacid=23157013 polypeptide=Lus10027863 locus=Lus10027863.g ID=Lus10027863.BGIv1.0 annot-version=v1.0 ATGAAAGAGCTCAATCTCCTCCGCCGCTCACTCCTCTACCACCACCGCCGCCGCGCAAATTCACATCAATCACTCCAATCTCTGTACTCAACCACTGCCG AACAATCTCCCCTCAAATCCCAACATCAAGACAGTCAAATCAACAATAGCAAAACCCCCAAATGGTTTACTCTCCCTCCGTTCACGTCCACAGTGAACGG CTCCGCCGTCGGGAAAGCAATCTCCTCTTCCTCTACCACCGTTAACAACCACCCAACATCGGAAACCACCGCCCTCAAATGGGTCCTCCGCTCATGCCCT CAGCTCCCCAGGAGCCTTGTCCAGAAACTGTTCCGATTAAAACAGGTGACAGCTAAGGATTCGATGAATGTCGGGGATAGGATCTTACTCCCTGGTTCAG TAAATGTGGTTGCTTCCGAGAAGAAAGAGTGGCATTGCAGTGAAGAAGAAGTCGAGTTTATCCGTAGCATTGTGCTGTACAAGGATCCAGCTATAATTGT TGTAAATAAGCCTCCTGGCCTTCCTGTTCAGGGGGGCATTGGGATCAAAAGAAGCTTGGACGAACTGTCTGTAACTTGTTTACGATATGACTCGTCAGAC CCTCCTCGTCTGGTTCATAGACTAGACAGAGACAGCAGTGGAATATTGTTAATGGGAAGGACCCAATCAAGCGCAACGTTTCTGCATTCGATTTTCCGGG AGAAAACTTTTGCTGCACCGGATAAGAAAGTTGGTGGTTTGTTCTTAAAGGACAGAAGAAGAATCCTAGAACGGAAGTACTGGGCGCTTGTCATCGGATC GCCGAGGCGTTCGAAGGGATTCATTTCAGCTCCATTGGGAAAGGTGGTGTTAGATGACGGGAAATCTGATCGGATAACAGTGATCGATAACCCCGAAAAC TCGTCCTCCCAGCATGCCATAACGCATTACAAAGTTATCAAAACATCCTCTGATGGTCAGTATGGTTTTGACTCCAATTCTAAGGGTTTACGCTATACTT GGTTAGAGCTGTGCCCTCTCACTGGAAGAAAGCATCAGATCAGGGTACATTGTGCTGAAGTATTAGGAACACCATTAGTAGGGGACTACAAGTACGGTTG GCAAGCTCACAAGAACATGAAGAAGCAGGAGGCGCATTCTGATCTCGAGATTAGAGAACCAAACCGAAAAGTTTGTGGCGAAAAGATGCTTCCTTTCGGG CTTGATTTAGAAAGTGGAAGCATCCATGACAAAACACCACGCTTGCATCTCCACTGCAAGCAAATGGTGCTACCTGATGTGTCACAGGCCCTGGATGACG TGGACAGAACCGGAGACTTAGATTTTTCGCAGGTGAAGAACCTGAAATTCGATGCTCCTTTGCCTCCGTTCATGGAGAAGAGCTGGAACGCGTTGAGTTC CTGA
AA sequence Show only first row Show all	>Lus10027863 pacid=23157013 polypeptide=Lus10027863 locus=Lus10027863.g ID=Lus10027863.BGIv1.0 annot-version=v1.0 MKELNLLRRSLLYHHRRRANSHQSLQSLYSTTAEQSPLKSQHQDSQINNSKTPKWFTLPPFTSTVNGSAVGKAISSSSTTVNNHPTSETTALKWVLRSCP QLPRSLVQKLFRLKQVTAKDSMNVGDRILLPGSVNVVASEKKEWHCSEEEVEFIRSIVLYKDPAIIVVNKPPGLPVQGGIGIKRSLDELSVTCLRYDSSD PPRLVHRLDRDSSGILLMGRTQSSATFLHSIFREKTFAAPDKKVGGLFLKDRRRILERKYWALVIGSPRRSKGFISAPLGKVVLDDGKSDRITVIDNPEN SSSQHAITHYKVIKTSSDGQYGFDSNSKGLRYTWLELCPLTGRKHQIRVHCAEVLGTPLVGDYKYGWQAHKNMKKQEAHSDLEIREPNRKVCGEKMLPFG LDLESGSIHDKTPRLHLHCKQMVLPDVSQALDDVDRTGDLDFSQVKNLKFDAPLPPFMEKSWNALSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19440			Pseudouridine synthase family ...		Lus10027863 [exp]	0	1
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Lus10028574 [exp]	3.9	0.9079
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	8.2	0.8687
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10032163 [exp]	9.3	0.9056
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	10.0	0.8908
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	11.8	0.8893
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	14.5	0.9030
AT4G32520		AtSHMT3, SHM3	serine hydroxymethyltransferas...		Lus10005916 [exp]	15.5	0.8773
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	17.5	0.8890
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	20.2	0.8754
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	20.5	0.8891

Compare expression of checked genes

Lus10027863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.