Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34230 491 / 3e-175 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT3G19450 473 / 3e-168 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G39330 335 / 5e-114 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 327 / 2e-110 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 322 / 2e-108 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 310 / 5e-104 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37990 291 / 1e-96 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 275 / 2e-90 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT1G72680 256 / 6e-83 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT5G51970 55 / 3e-08 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002812 [exp] 657 / 0 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 590 / 0 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 590 / 0 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002089 [exp] 322 / 9e-109 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 318 / 3e-107 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 315 / 5e-106 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 309 / 2e-103 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10017285 [exp] 289 / 1e-95 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 286 / 2e-94 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095800 [exp] 528 / 0 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G307200 [exp] 340 / 1e-115 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 332 / 1e-112 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 327 / 2e-110 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 325 / 7e-110 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 323 / 1e-108 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 314 / 2e-105 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.002G018300 [exp] 287 / 4e-95 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 282 / 1e-92 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 277 / 4e-91 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10027864 pacid=23156886 polypeptide=Lus10027864 locus=Lus10027864.g ID=Lus10027864.BGIv1.0 annot-version=v1.0 ATGGGTAGCATCGGAAAGGAAAGAACCATCGTCGGCTGGGCCGCCACCGATCCTTCAGGCGTCCTCACTCCTCACACCTTCACTCTCAGGAACACCGGCC CTGAAGATGTGTTCATCAGAGTGAAGTGCTGCGGAATCTGCCATAGCGACATCCACCAGGTGAAGAACGACCTTGGAATGTCTCGTTACCCCATGGTCCC TGGACATGAAGTGGTGGGGGAGGTAATGGAGGTGGGATCGGAGGTGACCAAGTATAAAGCAGGGGACATCGTCGGAGTCGGACTCCTCGTCGGATGCTGC CGGAGCTGCCGCGCTTGCGAATCCGACATCGAGCAGTACTGCAACAAGAAGATCTGGTCGTACAACGACGTGTACACCGATGGGAAACCCACGCAAGGCG GGTTTGCAGAGTCCATGGTCGTTGATCAGAAATTTGTGGTGAAGATCCCGGAAGGGATGTCACCTGAGCAGGCTGCACCCCTGCTATGCGCAGGGGTGAC GGTTTACAGCCCGCTGATCCATTTCGGGCTGAACCAAACTGGATTGAGGGGCGGCATCTTGGGGCTTGGTGGAGTTGGCCACATGGGAGTCAAGATTGCT AAAGCAATGGGTCACCATATAACTGTGATAAGCTCTTCTGATAAGAAGAGAGTTGAGGCATTGGAGCATTTGGGAGCTGATGACTATCTGGTTAGCTCTG ATAAGGAAAAGATAGAAGCGGCTGCCGATTCGTTCGATTACATCATTGATACCGTACCGGTTAACCACCCGCTCGAGCCATACCTTTCTCTGTTGAAGGT TGATGGAAAGTTGATCTTGATGGGTGTTATCAACACACCTTTGCAGTTTATCAGCCCCATGGTCATGCTTGGGAGGAAGGCCATAACGGGGAGTTTCGTG GGGAGCATGAAGGAAATGGAGGAGATGCTTGAGTTCTGCAGGGAGAAAGGGTTGAGCTCCATGATAGAGGTGATTAAGATGGACTACATCAACACGGCAT TCGAGAGGCTGGAGAAGAATGATGTTCGCTACAGGTTCGTGGTCGATGTCGAGGGGAGCGACAAACTTGTTCAGCAATAA
AA sequence Show only first row Show all	>Lus10027864 pacid=23156886 polypeptide=Lus10027864 locus=Lus10027864.g ID=Lus10027864.BGIv1.0 annot-version=v1.0 MGSIGKERTIVGWAATDPSGVLTPHTFTLRNTGPEDVFIRVKCCGICHSDIHQVKNDLGMSRYPMVPGHEVVGEVMEVGSEVTKYKAGDIVGVGLLVGCC RSCRACESDIEQYCNKKIWSYNDVYTDGKPTQGGFAESMVVDQKFVVKIPEGMSPEQAAPLLCAGVTVYSPLIHFGLNQTGLRGGILGLGGVGHMGVKIA KAMGHHITVISSSDKKRVEALEHLGADDYLVSSDKEKIEAAADSFDYIIDTVPVNHPLEPYLSLLKVDGKLILMGVINTPLQFISPMVMLGRKAITGSFV GSMKEMEEMLEFCREKGLSSMIEVIKMDYINTAFERLEKNDVRYRFVVDVEGSDKLVQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10027864 [exp]	0	1
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10038014 [exp]	2.6	0.9829
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	4.6	0.9739
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	5.3	0.9685
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012143 [exp]	5.3	0.9763
AT1G02570			unknown protein		Lus10010004 [exp]	5.9	0.9728
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	8.0	0.9626
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	8.2	0.9736
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10022610 [exp]	9.2	0.9320
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10005682 [exp]	9.7	0.9296
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Lus10035909 [exp]	10.8	0.9633

Compare expression of checked genes

Lus10027864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.