Plant FIBer expression Database

Lus10027865 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15240 176 / 3e-55 UNC-50 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002813
[exp]
105 / 1e-28 AT2G15240 281 / 8e-97 UNC-50 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G095900
[exp]
194 / 2e-62 AT2G15240 379 / 2e-134 UNC-50 family protein (.1)
Potri.001G300100
[exp]
165 / 6e-51 AT2G15240 342 / 5e-120 UNC-50 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05216 UNC-50 UNC-50 family
Representative CDS sequence
>Lus10027865 pacid=23156913 polypeptide=Lus10027865 locus=Lus10027865.g ID=Lus10027865.BGIv1.0 annot-version=v1.0
ATGTTGCCTACTTCGTCCAGAGCTCGGGCTTCGTCATCCGCATCTAGAGCGCAATCCGTGCTCCCGCAGTACCTCCGACGGATCATTAAGTGGCAACAAA
TGGACATTGAATACACGTTTTGGCAAATGCTTCATCTATGCAGCTCGCCCAAAGTTGTCTATCAGCACACTAAGTATCATAAACAAACTAAGAATCAATG
GGCACGTGATGATCCTGCTTTTGTTGTAATCTGCAGTCTTCTTCTGGCCGTTGCGACTTTGGCTTATTGTGCTGCGTATGATCACAGTGCCTCTCACACT
GTTTTTGTAGTTTTATCAGTGCTCTTCTTCCACTTCTTATTTTCCGGGGTGCTTCTGGCTACAGCTTGTTGGTTCTTGACTAACTCATACCTTCGGGAGG
AGTCTCCAAATCGTCATGTTGTCGAGCAACGGGTCGAATGGCAAGTTGTACGCCTTCGATGTGCACTGCAATTCTTTCTTCCCGATGTTCGTTATGCTCT
ATGTTATATTGAGTGGATTCAGCCCTTCAAGATACTTCATGAACATGTACTTCAGTCAATGGTCGTTGTAATATCTCCTAGGCTAACTTACGCCTAA
AA sequence
>Lus10027865 pacid=23156913 polypeptide=Lus10027865 locus=Lus10027865.g ID=Lus10027865.BGIv1.0 annot-version=v1.0
MLPTSSRARASSSASRAQSVLPQYLRRIIKWQQMDIEYTFWQMLHLCSSPKVVYQHTKYHKQTKNQWARDDPAFVVICSLLLAVATLAYCAAYDHSASHT
VFVVLSVLFFHFLFSGVLLATACWFLTNSYLREESPNRHVVEQRVEWQVVRLRCALQFFLPDVRYALCYIEWIQPFKILHEHVLQSMVVVISPRLTYA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15240 UNC-50 family protein (.1) Lus10027865
[exp]
0 1
AT1G74690 IQD31 IQ-domain 31 (.1) Lus10042173
[exp]
3.6 0.8748
AT2G14835 RING/U-box superfamily protein... Lus10002131
[exp]
4.9 0.8711
AT4G38510 ATPase, V1 complex, subunit B ... Lus10024002
[exp]
8.7 0.8606
AT1G05520 Sec23/Sec24 protein transport ... Lus10021963
[exp]
9.0 0.8660
AT3G27320 alpha/beta-Hydrolases superfam... Lus10022326
[exp]
11.2 0.8543
AT3G26370 O-fucosyltransferase family pr... Lus10036875
[exp]
11.7 0.8540
AT1G05520 Sec23/Sec24 protein transport ... Lus10041256
[exp]
11.7 0.8514
AT3G57890 Tubulin binding cofactor C dom... Lus10023821
[exp]
15.9 0.8313
AT4G18710 DWF12, UCU1, BI... ULTRACURVATA 1, DWARF 12, BRAS... Lus10015274
[exp]
19.5 0.8251
AT4G04910 NSF N-ethylmaleimide sensitive fac... Lus10015440
[exp]
21.0 0.8359

Lus10027865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.