Plant FIBer expression Database

Lus10027866 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G15270 85 / 9e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002814
[exp]
133 / 2e-39 AT2G15270 138 / 2e-41 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G300300
[exp]
94 / 1e-24 AT2G15270 96 / 5e-25 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06658 DUF1168 Protein of unknown function (DUF1168)
Representative CDS sequence
>Lus10027866 pacid=23157042 polypeptide=Lus10027866 locus=Lus10027866.g ID=Lus10027866.BGIv1.0 annot-version=v1.0
ATGTCGACGGGCAAGCCCAAGGACGGGGACTTGCAGATAGTACCGGTGACGGCGGCGGCAGATAATCCGAGGCCTCCAGCGGTTCCGCCACTCCCACTCA
AAGTTTCGGCCGCGTCGAGGGGATCCTCTGCGCTGGTCGAGTATAAAGGGCCGGTGTTCAAGGAAGAGGAGGAGGATTTGGAGCTGAAGCTTCGGCGGAT
CCTTGAGAATGTACCTGTTCGAGTCAGCAATACTTCCGGAAGTTCCGCTGGTGCCGGCTCCGGTGACTTTCACCAGTATAGGCAAATGAGGCGGAAAGAG
CAAGACCGGGTTAAGAGGATGGAAGACGACTACCAGAAAACGAAAGAAGCTGCAGAGTTCAAGATGAGAAGAGAGGAAAGGCTGAAAGCCGCCGAGGAGC
GAACATCAAAGAAGCGCACAAAACGGCAGAGGAAGAAGCAGAGGCAAAAGCAGAAGAAGACGGTGACGTCGACCCAAGAATGTGCTGCTGCAAATGCCAA
AAAAGATCCCTCGAAGAAAGATGAATCTTCAGACGATGAAGAGGAGTCCGATTAA
AA sequence
>Lus10027866 pacid=23157042 polypeptide=Lus10027866 locus=Lus10027866.g ID=Lus10027866.BGIv1.0 annot-version=v1.0
MSTGKPKDGDLQIVPVTAAADNPRPPAVPPLPLKVSAASRGSSALVEYKGPVFKEEEEDLELKLRRILENVPVRVSNTSGSSAGAGSGDFHQYRQMRRKE
QDRVKRMEDDYQKTKEAAEFKMRREERLKAAEERTSKKRTKRQRKKQRQKQKKTVTSTQECAAANAKKDPSKKDESSDDEEESD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G15270 unknown protein Lus10027866
[exp]
0 1
AT1G27435 unknown protein Lus10035173
[exp]
12.9 0.8479
AT3G03220 ATHEXPALPHA1.22... EXPANSIN 13, expansin A13 (.1) Lus10039009
[exp]
14.0 0.8481
AT3G18600 P-loop containing nucleoside t... Lus10009616
[exp]
25.0 0.8290
AT1G19990 unknown protein Lus10033141
[exp]
28.8 0.8326
AT5G55140 ribosomal protein L30 family p... Lus10011966
[exp]
42.2 0.7953
AT1G61010 CPSF73-I cleavage and polyadenylation s... Lus10001372
[exp]
57.7 0.7953
AT1G30130 unknown protein Lus10042821
[exp]
62.0 0.7462
AT1G01910 P-loop containing nucleoside t... Lus10041377
[exp]
66.2 0.8017
AT1G78560 Sodium Bile acid symporter fam... Lus10013700
[exp]
82.5 0.8011
AT5G52220 unknown protein Lus10038870
[exp]
120.5 0.7789

Lus10027866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.