Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19460 170 / 5e-53 Reticulon family protein (.1.2) AT2G15280 142 / 3e-42 Reticulon family protein (.1.2) AT3G10915 99 / 2e-25 Reticulon family protein (.1.2.3.4.5.6) AT3G61560 100 / 4e-25 Reticulon family protein (.1.2) AT3G54120 95 / 5e-24 Reticulon family protein (.1) AT2G46170 95 / 2e-23 Reticulon family protein (.1.2) AT4G23630 90 / 2e-21 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT1G64090 88 / 7e-21 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 87 / 4e-20 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 86 / 5e-20 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002815 [exp] 333 / 2e-117 AT3G19460 188 / 1e-60 Reticulon family protein (.1.2) Lus10019812 [exp] 246 / 5e-83 AT3G19460 208 / 1e-68 Reticulon family protein (.1.2) Lus10014102 [exp] 222 / 2e-73 AT3G19460 209 / 5e-69 Reticulon family protein (.1.2) Lus10032451 [exp] 103 / 4e-27 AT3G18260 268 / 9e-92 Reticulon family protein (.1) Lus10034224 [exp] 102 / 3e-26 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) Lus10028753 [exp] 98 / 4e-23 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10038833 [exp] 89 / 4e-21 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10014948 [exp] 88 / 7e-21 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10035537 [exp] 87 / 7e-21 AT3G54120 185 / 2e-59 Reticulon family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G300400 [exp] 199 / 2e-64 AT3G19460 145 / 8e-44 Reticulon family protein (.1.2) Potri.009G096200 [exp] 157 / 8e-48 AT2G15280 132 / 1e-38 Reticulon family protein (.1.2) Potri.016G110200 [exp] 115 / 2e-31 AT3G54120 193 / 1e-62 Reticulon family protein (.1) Potri.019G057400 [exp] 105 / 3e-27 AT3G10915 260 / 6e-88 Reticulon family protein (.1.2.3.4.5.6) Potri.012G035600 [exp] 100 / 4e-25 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 94 / 3e-23 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.013G160900 [exp] 89 / 3e-21 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.015G027300 [exp] 88 / 9e-21 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 84 / 2e-19 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G044300 [exp] 82 / 6e-19 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10027867 pacid=23156973 polypeptide=Lus10027867 locus=Lus10027867.g ID=Lus10027867.BGIv1.0 annot-version=v1.0 ATGGGAGACACCGTGGATCCTCCTCCTCCTCATCGCACCACCGTCCACGAGATGCTCGGCGGCGGCTCAGTTGCTGATGCTCTTCTATGGCGGAGATGGG GGAGAAGCGTGAAGTTGTTAATCTTCTCGACGACGTCGTGGTACCTGTTCGAGCGAGCAGGATACAATCTGATGACGTTCATCGCGAACGTGTTGTTCTC GCTCGTGGCGATCCTCTTCCTGTGGGCGAAATCTGCTTCTCTTCTCAATCGGCCGCTACCGCCGATTCCTGATCTCGAAATAACTGAGGAGACTGTAGAT AAGATTGTGCATGTTGCTCAAGGCTATGTCAAAAATGTGTTGGCTATTGGATGTGACATTGCAGTTGAGAGGAACTTGAAGGTTTTCCTACAGGTTTCAT TCGTCACGTGGCTCGTTTCATACGTTGGTAGCCTCTTCAGTTTCCTTACTTTTGTATACGTTGGTGAGTGCCCTAGTCCCTTAACACAATGGTGGCCAAT TGGTGCGAAGTCTAGGAAGTTCTCTTATAGATGTTTGCTCTTGCTTGTAGGGGTACTTCTTAGTCTTTCGATTCCGGTGCTATATGAAAGATTCCAGCAC CGGATTGATGAGAATCTGCTCATGACACGGAGAATACTTGACTCTCAGTTTAGAAACCTTCTGAAGAAGATTCCAGCTCCATCACGTAAGGACAAGAAGG TCCAATAG
AA sequence Show only first row Show all	>Lus10027867 pacid=23156973 polypeptide=Lus10027867 locus=Lus10027867.g ID=Lus10027867.BGIv1.0 annot-version=v1.0 MGDTVDPPPPHRTTVHEMLGGGSVADALLWRRWGRSVKLLIFSTTSWYLFERAGYNLMTFIANVLFSLVAILFLWAKSASLLNRPLPPIPDLEITEETVD KIVHVAQGYVKNVLAIGCDIAVERNLKVFLQVSFVTWLVSYVGSLFSFLTFVYVGECPSPLTQWWPIGAKSRKFSYRCLLLLVGVLLSLSIPVLYERFQH RIDENLLMTRRILDSQFRNLLKKIPAPSRKDKKVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19460			Reticulon family protein (.1.2...		Lus10027867 [exp]	0	1
AT3G19460			Reticulon family protein (.1.2...		Lus10002815 [exp]	1.0	0.9326
AT1G04360			RING/U-box superfamily protein...		Lus10021197 [exp]	3.7	0.9295
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023361 [exp]	10.2	0.9256
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	11.9	0.9272
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10028650 [exp]	19.8	0.8584
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	19.9	0.9097
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	21.0	0.9183
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	21.9	0.9236
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10014104 [exp]	23.9	0.9231
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	24.0	0.9100

Compare expression of checked genes

Lus10027867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.