Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 856 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 831 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 780 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 158 / 1e-45 unknown protein AT1G72190 99 / 2e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 98 / 8e-22 FDH formate dehydrogenase (.1) AT1G68010 98 / 8e-22 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 93 / 1e-20 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 89 / 3e-19 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 78 / 2e-15 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019818 [exp] 950 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 947 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 427 / 6e-143 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 260 / 6e-84 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 98 / 4e-22 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 98 / 1e-21 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 99 / 3e-21 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10025796 [exp] 94 / 1e-20 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 92 / 3e-20 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096600 [exp] 914 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 907 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 868 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 857 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 796 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 790 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 103 / 1e-23 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 92 / 7e-20 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.003G052700 [exp] 91 / 1e-19 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151100 [exp] 85 / 1e-17 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10027868 pacid=23157003 polypeptide=Lus10027868 locus=Lus10027868.g ID=Lus10027868.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCCACCGCCGCCTCCCTCAACCTCCCCTCCCTAAAATCGCATTTCTCCTCCCTATCCCACTCCACCTCCCAGCTCTCCCTCTCTTCCCTGC CCCTCCGCCGCGGCCGCCGATTCGCCGTCCTCCGGGCCGCCCTCGACGGGAAGCCCACCGTCCTCGTAGCCGAGAAGCTCGGCGAAGCCGGGCTCACCCT CCTCAAGGAGTTCGCCAACGTGGACTGTTCGTACAACCTCTCCCCTGAGGAGCTCAACACCAAGATCTCGCTCTGTGACGCGCTGATCGTCCGGAGCGCG ACCAAAGTCAGCCGAGAAGTGTTCGAATCCTCCGCCGGGAGGTTGAAGGTTGTCGGGAGAGCTGGCGTCGGGATCGATAATGTGGATCTGGCCGCCGCGA CAGAGCACGGGTGTTTGGTGGTGAATGCTCCGACAGCCAATACCGTTGCTGCTGCGGAGCATGGGATCGCTCTCTTGGCTGCCATGGCCAGGAATGTCGC TCAGGCGGATGCCTCTGTTAAATCTGGAAAATGGCAGAGGAACAAGTACGTGGGAGTCTCCCTAGTGGGGAAAACACTTGCAGTGATGGGATTCGGAAAG GTCGGAACAGAGGTAGCAAGGCGAGCCAAGGGGCTCGGGATGCATGTGATCGCGCACGATCCATATGCTCCAGCAGATCGTGCTCGCGCCATTGGTGTCG AGCTCGTAACCTTCGACGAAGCCATAGCCACTGCCGATTTCATCTCCCTGCATATGCCTCTCACCCCTACAACGTCCAAGATGCTGAACGACGAGACCTT CGCGAAGATGAAGAAGGGGGTCAGAATCGTCAATGTGGCTCGTGGAGGGGTGATCGATGAGGAGGCTCTGGTTAGGGCTCTGGACTCGGGAATCGTTGCT CAGGCTGCCCTTGATGTCTTCACTGTTGAGCCACCATCGCAGGATAGCAAATTGGTGATGCATGAGAATGTTACTGTCACTCCTCATCTCGGTGCTAGTA CCATTGAAGCTCAGGAAGGAGTGGCTATTGAAATAGCTGAAGCTGTCGTTGGAGCATTGAAGGGTGAGCTTGCTGCTACTGCTGTCAATGCACCAATGGT GCCTGCAGAGGTGCTATCAGAGCTGAAACCATACGTCGTCCTGGCAGAAAAACTCGGCCGGTTGGCTGTCCAGCTAGTAACGGGAGGAAGCGGAGTCAAA TCCGTGAAAGTCACCTATGCATCCGCCAGAGCACCAGATGATCTCGACACAAGACTCCTCCGCGCAATGATCACCAAGGGTCTCATCGAACCGATCTCCA GCGTCTTCGTCAACTTGGTAAACGCTGACTTCACCGCCAAGCAACGCGGAGTCCGAATAACTGAGGAACGCATCGTCCTGGACGGGTCCCCTGAGGCACC CTTGGACTTCATCCAGGTCCAAATCGCCAACGTTGAGTCCAAATTCGCCAGCGCCATGTCTGAGACAGGGGAGATTAAGGTCGAGGGACGAGTTAAAGAT GGGGTCCCACACCTTACACGTGTGGGATCGTTCGAGGTGGACGTGAGCTTGGAAGGGAGTATTATTTTGTGCCGTCAGGTTGATCAGCCCGGGATGATTG GGAAAGTTGGGAGCGTGTTGGGGGAGGAGAATGTGAATGTGAGTTTTATGAGCGTGGGGAGGATCGCTCCGAGGAAGCAGGCTGTGATGGCGATCGGTGT CGATGATCAGCCGAGCAAGCGGGTTCTGCAAAAGATCGGTGAGATCCCTGCTGTTGAAGAGTTTGTTTTCCTCAAGTTGTAG
AA sequence Show only first row Show all	>Lus10027868 pacid=23157003 polypeptide=Lus10027868 locus=Lus10027868.g ID=Lus10027868.BGIv1.0 annot-version=v1.0 MAASTAASLNLPSLKSHFSSLSHSTSQLSLSSLPLRRGRRFAVLRAALDGKPTVLVAEKLGEAGLTLLKEFANVDCSYNLSPEELNTKISLCDALIVRSA TKVSREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKSGKWQRNKYVGVSLVGKTLAVMGFGK VGTEVARRAKGLGMHVIAHDPYAPADRARAIGVELVTFDEAIATADFISLHMPLTPTTSKMLNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGIVA QAALDVFTVEPPSQDSKLVMHENVTVTPHLGASTIEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELKPYVVLAEKLGRLAVQLVTGGSGVK SVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGVRITEERIVLDGSPEAPLDFIQVQIANVESKFASAMSETGEIKVEGRVKD GVPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDDQPSKRVLQKIGEIPAVEEFVFLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34200		EDA9	embryo sac development arrest ...		Lus10027868 [exp]	0	1
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10039587 [exp]	1.0	0.9366
AT2G26920			Ubiquitin-associated/translati...		Lus10036096 [exp]	3.0	0.9092
AT1G28590			GDSL-like Lipase/Acylhydrolase...		Lus10013938 [exp]	4.5	0.8878
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10042110 [exp]	8.1	0.9047
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	8.9	0.9062
AT2G45060			Uncharacterised conserved prot...		Lus10028177 [exp]	10.0	0.8996
AT1G45000			AAA-type ATPase family protein...		Lus10041964 [exp]	12.7	0.8888
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	13.9	0.9111
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10016645 [exp]	15.0	0.8905
AT1G20950			Phosphofructokinase family pro...		Lus10016047 [exp]	15.2	0.8819

Compare expression of checked genes

Lus10027868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.