Plant FIBer expression Database

Lus10027869 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01640 120 / 4e-35 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002816
[exp]
212 / 5e-71 AT2G01640 156 / 3e-49 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G097000
[exp]
144 / 2e-44 AT2G01640 133 / 3e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10027869 pacid=23156990 polypeptide=Lus10027869 locus=Lus10027869.g ID=Lus10027869.BGIv1.0 annot-version=v1.0
ATGTCGGTTTCTCGTGAAAAAACTTGCAGGAAAGATGCCAACGCCAAAACGGAGCGCAAGTTCGAGAAGAAGGTCGAGTTTTATTCCAAGGTTAAGGATT
CGGTTTCGCTCAATGCCACCAAGTCTATCACCAAGAAGAAGAAACTGCGAAGCCGGCAGAAGAAGCTGAAAGCGTACGATCTCACCACACTTACAGAGTT
CCTTCCTGATGTGAATGCTCCGAAAGAAAAGGCAGTAACTGTAAAGGAGTTCAAGCTGAATAGCAAGTCAAGGAAGAAGATACTGTGCGTAATTCTGGAG
ACGGAAGCGAAACAAATGAATACCGTTCTCAATCATCCTGCTTTCCTGTCTGATCCTTTGGGATCCATTCACCAACATCTACAGAGCACTCAGCCTCCGT
TGGAAGAAAAGCCGAGGAAGAAGGAGAACAAGAACGGGAAGAAGAAATCGAAGAGTAAAAAGAAGTCGTCTGGAACTGAACTGATGGAGAGCTGA
AA sequence
>Lus10027869 pacid=23156990 polypeptide=Lus10027869 locus=Lus10027869.g ID=Lus10027869.BGIv1.0 annot-version=v1.0
MSVSREKTCRKDANAKTERKFEKKVEFYSKVKDSVSLNATKSITKKKKLRSRQKKLKAYDLTTLTEFLPDVNAPKEKAVTVKEFKLNSKSRKKILCVILE
TEAKQMNTVLNHPAFLSDPLGSIHQHLQSTQPPLEEKPRKKENKNGKKKSKSKKKSSGTELMES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G01640 unknown protein Lus10027869
[exp]
0 1
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Lus10043248
[exp]
9.1 0.7509
AT3G23620 Ribosomal RNA processing Brix ... Lus10035575
[exp]
10.6 0.7933
AT5G62300 Ribosomal protein S10p/S20e fa... Lus10027194
[exp]
14.5 0.7264
AT4G02750 Tetratricopeptide repeat (TPR)... Lus10017298
[exp]
18.7 0.6480
AT4G18820 AAA-type ATPase family protein... Lus10007316
[exp]
32.9 0.7129
AT1G62930 RPF3 RNA processing factor 3, Tetra... Lus10014242
[exp]
34.9 0.6638
AT1G26880 Ribosomal protein L34e superfa... Lus10008617
[exp]
36.3 0.7136
AT4G18100 Ribosomal protein L32e (.1) Lus10004589
[exp]
42.2 0.6950
AT1G41880 Ribosomal protein L35Ae family... Lus10040235
[exp]
44.5 0.6954
AT3G55510 RBL REBELOTE, Noc2p family (.1) Lus10041417
[exp]
46.5 0.6816

Lus10027869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.