Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10630 241 / 2e-82 ATARFA1F ADP-ribosylation factor A1F (.1) AT2G47170 240 / 5e-82 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 240 / 9e-82 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G70490 239 / 1e-81 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 239 / 1e-81 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 239 / 2e-81 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G15310 239 / 5e-81 ATARFB1A ADP-ribosylation factor B1A (.1) AT5G17060 190 / 5e-62 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 189 / 1e-61 ATARFB1C ADP-ribosylation factor B1C (.1) AT2G24765 178 / 2e-57 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002817 [exp] 326 / 8e-116 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10031436 [exp] 240 / 1e-81 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 240 / 1e-81 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 240 / 2e-81 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 240 / 2e-80 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 241 / 2e-78 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 239 / 2e-73 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10013020 [exp] 199 / 2e-63 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10009571 [exp] 191 / 1e-62 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142100 [exp] 251 / 4e-86 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.001G301200 [exp] 249 / 2e-85 AT3G62290 284 / 4e-99 ADP-ribosylation factor A1E (.1.2.3) Potri.009G096900 [exp] 242 / 1e-82 AT1G10630 273 / 5e-95 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 241 / 3e-82 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 241 / 3e-82 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 241 / 3e-82 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 241 / 4e-82 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 239 / 9e-82 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 239 / 9e-82 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 239 / 9e-82 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00025 [flax] [poplar] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Lus10027870 pacid=23157037 polypeptide=Lus10027870 locus=Lus10027870.g ID=Lus10027870.BGIv1.0 annot-version=v1.0 ATGGGGACGATGACCTCAAGGATTACCAAGCTGTTCTTCCCCAACAGTCGAGTTCGGATTCTGATGATCGGTCTCGACGGTAACGGTAAAACCACGATTC TCTACAAGTTGAAGCTCGGAGAAACCGTCACAACCACACCAACAATCGGTTTCAACGTCGAGACCGTGCGGTACAAGAACGTCAGCTTTTCAGTATGGGA CGTTGGAGGGCAACAAAAGATTCGGGGTTTGTGGAGGCATTACTTCCACAATGTCGAGGGGCTGGTGTTTGTCGTCGACAGCAACGACAGGGCGAGAATT GCGGAAGCTCGAAATGAGCTCCACAGGGTTTTATCCGATGTTGAGCCGAGGGATTCGGCATTGTTGGTTTTCACCATTAAGCAAGATTTTCCGGATCCAA TGACTGGTTCCGAGATCGCTTATAAGCTCGGCCGTCGACAATGGTTTGTGCAGTGTTCTTCTGCTACATCTGGGGAAGGGCTCTACGAAGGCCTAAACTG GCTCTCGACAATCATCGCGAGTAAGCCGGTATAA
AA sequence Show only first row Show all	>Lus10027870 pacid=23157037 polypeptide=Lus10027870 locus=Lus10027870.g ID=Lus10027870.BGIv1.0 annot-version=v1.0 MGTMTSRITKLFFPNSRVRILMIGLDGNGKTTILYKLKLGETVTTTPTIGFNVETVRYKNVSFSVWDVGGQQKIRGLWRHYFHNVEGLVFVVDSNDRARI AEARNELHRVLSDVEPRDSALLVFTIKQDFPDPMTGSEIAYKLGRRQWFVQCSSATSGEGLYEGLNWLSTIIASKPV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	0	1
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	4.5	0.8695
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	5.2	0.8857
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10040238 [exp]	8.3	0.8659
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	10.5	0.8638
					Lus10041944 [exp]	12.5	0.8646
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	12.5	0.8557
AT2G34290			Protein kinase superfamily pro...		Lus10035236 [exp]	19.4	0.8258
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10029233 [exp]	20.7	0.7648
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10009557 [exp]	21.9	0.8374
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	22.6	0.8168

Compare expression of checked genes

Lus10027870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.