Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34190 129 / 8e-39 SEP1 stress enhanced protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002821 [exp] 229 / 6e-78 AT4G34190 119 / 2e-34 stress enhanced protein 1 (.1) Lus10014093 [exp] 144 / 1e-44 AT4G34190 116 / 7e-34 stress enhanced protein 1 (.1) Lus10019821 [exp] 137 / 6e-42 AT4G34190 119 / 6e-35 stress enhanced protein 1 (.1) Lus10002818 [exp] 99 / 5e-28 AT4G34190 87 / 1e-23 stress enhanced protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096800 [exp] 145 / 3e-45 AT4G34190 130 / 1e-39 stress enhanced protein 1 (.1) Potri.001G301100 [exp] 138 / 1e-42 AT4G34190 140 / 1e-43 stress enhanced protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027871 pacid=23156910 polypeptide=Lus10027871 locus=Lus10027871.g ID=Lus10027871.BGIv1.0 annot-version=v1.0 ATGACGACGGCGGCGCCGGCGACGGCAGTTTCAGCTCATCTCTCTCCGTCGCTTTCCATCTCTGCCTGCTATGCTTCCCCTTCCACATCAACCCTCTCGA TTTCCCGGCGACCCAGTTCGGGGTTCGGCCGATTAGGAGGCTCAGCTTTCACAATTGGGTCATCTACTCCACTGTTGGTATCGAGAACCAGCCGTGGTGG TAACAAGCCTCGACAAAGGACCTCGGTAGTCTCGATAAAATGCGAGCAAAGCAGCAGCCAGAAAGGCAGCAGTCTGGATGTATGGCTAGGGCGAGCCGGG ATGATTGGCTTCGCTGTGGCGATCACGGTTGAAGTTTCTACTGGGAAAGGCCTCCTACAGAATTTCGGGCTAGCGAGCCCCATGCCTACGGCTGCATTGG CGATAACAGGATTAGTTGGTGTGCTCACTGCAGTGTTCATCTTCCAGTCCTCGTCCAAAAGTTGA
AA sequence Show only first row Show all	>Lus10027871 pacid=23156910 polypeptide=Lus10027871 locus=Lus10027871.g ID=Lus10027871.BGIv1.0 annot-version=v1.0 MTTAAPATAVSAHLSPSLSISACYASPSTSTLSISRRPSSGFGRLGGSAFTIGSSTPLLVSRTSRGGNKPRQRTSVVSIKCEQSSSQKGSSLDVWLGRAG MIGFAVAITVEVSTGKGLLQNFGLASPMPTAALAITGLVGVLTAVFIFQSSSKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10027871 [exp]	0	1
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10023320 [exp]	3.9	0.9267
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	7.1	0.9218
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	8.5	0.9180
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	11.7	0.9153
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10016517 [exp]	12.0	0.9182
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Lus10013789 [exp]	13.0	0.8738
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028869 [exp]	14.4	0.8599
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10014093 [exp]	15.9	0.8954
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10015831 [exp]	16.1	0.9008
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10025007 [exp]	17.7	0.9089

Compare expression of checked genes

Lus10027871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.