Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35220 310 / 8e-108 Cyclase family protein (.1) AT1G44542 300 / 1e-103 Cyclase family protein (.1) AT4G34180 290 / 5e-100 Cyclase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014091 [exp] 321 / 2e-112 AT1G44542 333 / 3e-116 Cyclase family protein (.1) Lus10014092 [exp] 302 / 1e-101 AT4G35220 366 / 3e-125 Cyclase family protein (.1) Lus10019822 [exp] 294 / 2e-101 AT4G35220 396 / 1e-140 Cyclase family protein (.1) Lus10001508 [exp] 264 / 1e-89 AT4G34180 281 / 2e-95 Cyclase family protein (.1) Lus10031454 [exp] 258 / 7e-87 AT4G34180 274 / 1e-92 Cyclase family protein (.1) Lus10031453 [exp] 256 / 2e-86 AT4G34180 278 / 4e-94 Cyclase family protein (.1) Lus10001509 [exp] 253 / 1e-85 AT4G34180 268 / 8e-91 Cyclase family protein (.1) Lus10019823 [exp] 114 / 6e-33 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097300 [exp] 315 / 8e-110 AT4G35220 343 / 6e-120 Cyclase family protein (.1) Potri.001G301501 [exp] 305 / 9e-106 AT4G35220 397 / 4e-141 Cyclase family protein (.1) Potri.001G301600 [exp] 299 / 2e-103 AT4G35220 363 / 1e-127 Cyclase family protein (.1) Potri.001G301700 [exp] 293 / 5e-101 AT4G35220 348 / 1e-121 Cyclase family protein (.1) Potri.009G097201 [exp] 276 / 2e-95 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF04199 [flax] [poplar] Cyclase Putative cyclase
Representative CDS sequence Show only first row Show all	>Lus10027872 pacid=23157101 polypeptide=Lus10027872 locus=Lus10027872.g ID=Lus10027872.BGIv1.0 annot-version=v1.0 ATGCCCACGTGGGGGTCGGCCGAAGGGCTAGGACAGTTCTTGACGTTGGTTGCTAGCATCAAGAACGGGTCCGAGGTCAATGTTGTGGAGATCAAGCTTG TCGCTCACACCGGCACCCATGTCGATGCTCCAAGCCACATTTACGAGGAGTATTACGAAGCTGGTTACGACGTTGATTCCCTAGACTTGGATGTCCTTAA TGGTCCTGCTTTGTTGGTGGATGTTCCAAAGAACAGTAACATAACTGCTGAAGTAATGAAGGCGCTGGTGATTCCAAAGGGAATAAAGCGAGTACTGTTC AGAACTCTGAACACCGATAGGAATCTGATGTACAATAAGGCCTTTGATTCGAGCTTTGCTGGGTTCACGGCCGACGGTGCTCAATGGCTCGTCGACAACA CCGAGATCAAGCTCGTTGGGCTCGACTACTTATCCGTGGCTACCTTCGACGAGGCTGTGCCAACCCATCTGGCTTTCCTCAAGAAAAGGGATATAATCCT GGTGGAAGGACTGAAACTGGAGAGCGTGGAAGCTGGGATGTACAATGTTCATTGCTTGCCGATGAGGTTACTGGGAGCTGACGGATCGCCAGCTAGATGC ATTCTCATCAAATGA
AA sequence Show only first row Show all	>Lus10027872 pacid=23157101 polypeptide=Lus10027872 locus=Lus10027872.g ID=Lus10027872.BGIv1.0 annot-version=v1.0 MPTWGSAEGLGQFLTLVASIKNGSEVNVVEIKLVAHTGTHVDAPSHIYEEYYEAGYDVDSLDLDVLNGPALLVDVPKNSNITAEVMKALVIPKGIKRVLF RTLNTDRNLMYNKAFDSSFAGFTADGAQWLVDNTEIKLVGLDYLSVATFDEAVPTHLAFLKKRDIILVEGLKLESVEAGMYNVHCLPMRLLGADGSPARC ILIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35220			Cyclase family protein (.1)		Lus10027872 [exp]	0	1
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	5.9	1.0000
AT3G63170			Chalcone-flavanone isomerase f...		Lus10032083 [exp]	6.1	0.9888
AT2G24960			unknown protein		Lus10042715 [exp]	7.0	0.9623
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	7.1	0.9537
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10025660 [exp]	7.6	0.9102
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	8.4	1.0000
AT5G52390			PAR1 protein (.1)		Lus10018204 [exp]	9.7	0.9633
					Lus10013255 [exp]	10.2	1.0000
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	10.6	0.9170
					Lus10025477 [exp]	10.7	0.9880

Compare expression of checked genes

Lus10027872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.