Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34160 202 / 1e-60 CYCD3;1 CYCLIN D3;1 (.1) AT5G67260 190 / 3e-56 CYCD3;2 CYCLIN D3;2 (.1) AT3G50070 185 / 2e-54 CYCD3;3 CYCLIN D3;3 (.1) AT2G22490 136 / 5e-36 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 125 / 5e-33 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT1G70210 127 / 7e-33 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G10440 122 / 2e-31 CYCD4;2 cyclin d4;2 (.1) AT4G37630 99 / 5e-23 CYCD5;1 cyclin d5;1 (.1.2) AT4G03270 92 / 2e-20 CYCD6;1 Cyclin D6;1 (.1) AT5G02110 68 / 2e-12 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002824 [exp] 291 / 3e-96 AT4G34160 142 / 7e-40 CYCLIN D3;1 (.1) Lus10019825 [exp] 232 / 9e-72 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10014089 [exp] 223 / 1e-68 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 181 / 7e-53 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10018739 [exp] 178 / 2e-51 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10019317 [exp] 176 / 4e-51 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10024796 [exp] 169 / 3e-48 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10029194 [exp] 127 / 5e-33 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 127 / 1e-32 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097800 [exp] 218 / 7e-67 AT4G34160 331 / 3e-112 CYCLIN D3;1 (.1) Potri.001G301800 [exp] 216 / 8e-66 AT4G34160 310 / 3e-103 CYCLIN D3;1 (.1) Potri.002G123000 [exp] 200 / 7e-60 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1) Potri.007G048300 [exp] 196 / 3e-58 AT5G67260 355 / 2e-121 CYCLIN D3;2 (.1) Potri.014G023000 [exp] 195 / 7e-58 AT4G34160 287 / 2e-94 CYCLIN D3;1 (.1) Potri.005G141900 [exp] 194 / 2e-57 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.002G103500 [exp] 149 / 6e-41 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 145 / 6e-40 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.008G146600 [exp] 130 / 4e-34 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.009G086700 [exp] 130 / 8e-34 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027874 pacid=23157040 polypeptide=Lus10027874 locus=Lus10027874.g ID=Lus10027874.BGIv1.0 annot-version=v1.0 ATGTCCCTCCTTCTCAACCCCCGCCGCAGCTCCTCGCCGGAACTCTCCGATTCCGACGACCTGACCTCCATCTCCTCCCTCTACTGCGATGAAGACCACC TCGAAGAAACCGGAGAAGGGGAGGTCCTCGATCCTCTTCTCGACTGTGTCCCCATCTCGGCAGCAGAAGATGACGACGACGAGCTCTGTTCTCTGTTCCT CAAAGAGCAGACCATCGACCGGCAAAAATCCGCCGTCGCCGTCGGTAGTAGTCGCTCCACTCGCCGCCGGAAAGCGGTGGAGTGGATGGTCAAGGTGAAC ACTCACTATGGATTCTCGACACTCACCGCCGTTTTAGCGATCGATTACCTCGACCGGTTTATCTCTTCCGGTCGTTGCTATCCAGACAAGCCATGGACGA TCCAGCTGGTCGCCGTCGCTTGCCTCTCTTTAGCGGCGAAAGTCGAGGAAACCGATGTCCCTCTCCTGCTTGACTTGCAGGTTGAGGGCGCGGATTATGT ATTAGAAGCGAAGACGATCCAGAGAATGGAGCTTCTGGTTCTATCAGAGCTAAAATGGAAGATGCATCCAGTCACTCCAATCTCGTTCATGGATTATATC GTTGAGAGGTTTCATTTGAAGAACGGTGATGCACAATTTGAGTTTCTCACCAGATGCCACCGTCTCCTTCTCTGCCTTTTATCCGATGCAAGATCTGTCA GATATCGTGCATCTGTTCTAGCAACTGCTACAGTGATGAACGTTGAGGACGCGAAGTATGTCTTTGAAGCGAAGACGATCCAGAGAATGGAGCTTCTGGT TCTATCAGAGCTGAAATGGAAGATGCATCCAGTGACTCCAATCTCGTTCATGGATTACATCGTTGAGAGGTTTCAGCTGAAGAACGGTGATGCACATTGG GAGTTTCTCACCAGATGCCACCGTCTCCTTCTCTGCCTTTTATCCGATGCAAGATCTGTCAGATATCGTGCATCTGTTCTAGCAACTGCTACAGTGATGA ACGTTATTGACCAAGTTGAGCACTTTAATTTCATCATTGACTCTCAGACTCAGTTCCTCTCTTCGCTCAACATCAGCCAGGAGAAGGTGAAGGAGTGTTA TGAGGTGATAATGGAGGTAGTAGCAGGAAGAAACAAGAGGAAGTACTCTTCTTCCTATGAAGAAGAAGATGATAAGTTTCTTCCAAGTAGTCCTAGTGAG GTGATTGATGCATCATTCAGCTGTGACAGCAGCAGCAGCAGCTCAAACCAGTCATTTTCAACTTTTGCTTCTTCTCGGAAGAAGAAGAAGAGCAGAACCC AAGAAGAAGAAGACCAATGGGTTCTTGTTGGTTTCGTTGGGACTCCCAATTAG
AA sequence Show only first row Show all	>Lus10027874 pacid=23157040 polypeptide=Lus10027874 locus=Lus10027874.g ID=Lus10027874.BGIv1.0 annot-version=v1.0 MSLLLNPRRSSSPELSDSDDLTSISSLYCDEDHLEETGEGEVLDPLLDCVPISAAEDDDDELCSLFLKEQTIDRQKSAVAVGSSRSTRRRKAVEWMVKVN THYGFSTLTAVLAIDYLDRFISSGRCYPDKPWTIQLVAVACLSLAAKVEETDVPLLLDLQVEGADYVLEAKTIQRMELLVLSELKWKMHPVTPISFMDYI VERFHLKNGDAQFEFLTRCHRLLLCLLSDARSVRYRASVLATATVMNVEDAKYVFEAKTIQRMELLVLSELKWKMHPVTPISFMDYIVERFQLKNGDAHW EFLTRCHRLLLCLLSDARSVRYRASVLATATVMNVIDQVEHFNFIIDSQTQFLSSLNISQEKVKECYEVIMEVVAGRNKRKYSSSYEEEDDKFLPSSPSE VIDASFSCDSSSSSSNQSFSTFASSRKKKKSRTQEEEDQWVLVGFVGTPN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	1.0	0.8318
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	2.8	0.8186
AT5G10310			unknown protein		Lus10035922 [exp]	3.2	0.7609
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	8.0	0.7681
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	18.5	0.6949
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10015306 [exp]	28.0	0.7576
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	29.4	0.6725
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	40.0	0.7263
AT4G20860			FAD-binding Berberine family p...		Lus10038446 [exp]	40.0	0.7327
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001009 [exp]	41.7	0.7121

Compare expression of checked genes

Lus10027874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.