Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34150 238 / 6e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G63220 62 / 8e-12 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G55470 57 / 3e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 51 / 2e-07 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G07940 50 / 4e-07 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G47710 45 / 1e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G03370 42 / 0.0003 C2 calcium/lipid-binding and GRAM domain containing protein (.1) AT5G06850 42 / 0.0003 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61720 41 / 0.0007 Ca2+dependent plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002825 [exp] 271 / 7e-92 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014088 [exp] 237 / 9e-78 AT4G34150 202 / 4e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019826 [exp] 228 / 4e-74 AT4G34150 191 / 2e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 72 / 1e-15 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 72 / 2e-15 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 64 / 2e-12 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10016347 [exp] 53 / 7e-08 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 52 / 1e-07 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 51 / 4e-07 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G301900 [exp] 250 / 6e-84 AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G097900 [exp] 238 / 1e-78 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 205 / 6e-66 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155600 [exp] 72 / 2e-15 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 59 / 1e-10 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.T125706 [exp] 52 / 1e-07 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.003G198301 [exp] 52 / 1e-07 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.006G063900 [exp] 50 / 9e-07 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G124000 [exp] 47 / 7e-06 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 47 / 8e-06 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10027875 pacid=23156903 polypeptide=Lus10027875 locus=Lus10027875.g ID=Lus10027875.BGIv1.0 annot-version=v1.0 ATGTCGTTTGTTTCCGGCATTCAAGGCCAGGTTCTCGAAGTTACAGTGATTGGATGCACGAAATTGAAGGACACTGAATGGTTGTCAAGGCAAGATCCAT ACGTTTGCATTGAGTACGGCAATAACAAGTCTAGGACAAGAACTTGTACTGATGGTGGGAAGAACCCTGCGTTTCAAGAGAAGTTTGTGTTTACGTTGAT TGAAGGGTTGAGGGAGCTGAATGTTGTGGTTTGGAACAGTAATACATTGACGTTTGATGATTTCATTGGTAATGGGAGAATTCAGTTGCAGAAGGTGCTT GCGGAAGGATATGACGACTCGAATTGGCCACTACAGACGAAAACCGGAAGGTATGCAGGAGAAGTGAGACTCATAATGCACTATGCCAATGGCAGAAAAC ACGATACGAGTTACGCTTCTTCGGCACCATATCCATCACATGTTCCTCATTACTCAATGTACTCAGCACCACCTCCTGCCAACACATCCTCGTCATACTA TTCGTATGCACCATCGCCATACGCTAACGCTCCTCCGACTGCATCCTATCCGACGTCGTATCATTACTCTTCACCGCATCCTCCTAACGGGTCTCCGGCT TATCCTTTGCTCCCAACTCCTTATTCTCCATCCCCATATCAACCATCATCTCCTTCACCTTATCCTCCAGATGGAGAAGGTACAACTCAGCAACTGCAAA GGGATGGAGATGATGTTGCAGTTGTTACAAACCTTGACGACTAG
AA sequence Show only first row Show all	>Lus10027875 pacid=23156903 polypeptide=Lus10027875 locus=Lus10027875.g ID=Lus10027875.BGIv1.0 annot-version=v1.0 MSFVSGIQGQVLEVTVIGCTKLKDTEWLSRQDPYVCIEYGNNKSRTRTCTDGGKNPAFQEKFVFTLIEGLRELNVVVWNSNTLTFDDFIGNGRIQLQKVL AEGYDDSNWPLQTKTGRYAGEVRLIMHYANGRKHDTSYASSAPYPSHVPHYSMYSAPPPANTSSSYYSYAPSPYANAPPTASYPTSYHYSSPHPPNGSPA YPLLPTPYSPSPYQPSSPSPYPPDGEGTTQQLQRDGDDVAVVTNLDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	0	1
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	1.0	0.9735
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	2.0	0.9722
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	2.4	0.9417
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	2.4	0.9527
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	3.5	0.9498
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	4.5	0.9425
AT5G01900	WRKY	ATWRKY62, WRKY6...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10022736 [exp]	5.2	0.9335
AT1G47380			Protein phosphatase 2C family ...		Lus10009763 [exp]	5.4	0.9012
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	8.0	0.9348
					Lus10034740 [exp]	8.9	0.9162

Compare expression of checked genes

Lus10027875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.