Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43060 550 / 0 Granulin repeat cysteine protease family protein (.1) AT1G47128 547 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT3G19390 515 / 0 Granulin repeat cysteine protease family protein (.1) AT4G36880 395 / 2e-135 CP1 cysteine proteinase1 (.1) AT3G19400 390 / 2e-133 Cysteine proteinases superfamily protein (.1.2) AT1G09850 377 / 1e-127 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G35350 350 / 4e-118 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 343 / 4e-115 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 340 / 5e-114 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 332 / 8e-111 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002827 [exp] 819 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10014087 [exp] 691 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 583 / 0 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 526 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 391 / 1e-132 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 362 / 1e-121 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10018083 [exp] 334 / 1e-111 AT5G50260 533 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10042078 [exp] 333 / 3e-111 AT5G50260 538 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Lus10006542 [exp] 331 / 1e-110 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302100 [exp] 613 / 0 AT1G47128 598 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.009G098100 [exp] 610 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 548 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 418 / 2e-144 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 405 / 5e-139 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 375 / 7e-127 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 356 / 2e-120 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.012G090900 [exp] 345 / 4e-116 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.015G087400 [exp] 343 / 4e-115 AT5G50260 550 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) Potri.011G066800 [exp] 340 / 3e-112 AT1G09850 359 / 7e-120 xylem bark cysteine peptidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF00396 [flax] [poplar] Granulin Granulin CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10027877 pacid=23157046 polypeptide=Lus10027877 locus=Lus10027877.g ID=Lus10027877.BGIv1.0 annot-version=v1.0 ATGGCGACCTTCTTCTTCTCCCTTCTCGTTCCCGTCCTCCTCTTAGCCGCCGTGTCCTCCGCCTTGGACACGTCTATCATCGACTACAACGCCCGCCACG GCAACCCAGTCGTCCCGGAGAGGTCCGAGGCGGAGCTCCGAGCCATGTACGATAACTGGGCCCTGACCCACCGCAAGAGCTACCACAACGCCGGATTCCT AGGAGGAGCGGCGGAGGAGAAGGAGAAGAGGTTCGAGATCTTCAAGGAGAACTCGAGGTTCGTCGACCAGCACAACTCTGTTGAGCGGAGCTACAGAGTC GGTCTGAATCGGTTCGCCGATCTTACCAACGAGGAGTACCGGTCCATGTATTTGGGAGCCAAGGTTCAGAGGAAAGTCAACGGATCGTCGTCGTCGGATG AGTACTTGTTCAAGAAGGGAGATGACCTTCCGGCGAGCGTTGATTGGAGGGAGAAGGGAGCTGTTGCTCCGGTCAAAGATCAAGGCCAGTGCGGGAGTTG CTGGGCCTTCTCAACCATTGGTGCAGTAGAAGGGATCAACCAGATCGTGACCGGTGAAATGATCACTCTATCGGAGCAGGAACTTGTCGATTGCGACAGG TCGGTTAATGCTGGTTGTGATGGAGGTCTCATGGACTATGCGTTCGAGTTCATCATCAACAATGGAGGCATCGATACCGAAGAAGACTATCCTTACAAGG CTGCTGATAACGTTTGTGACTCGAACAGGAAAAATGCCAAAGTTGTTACCATTGATGGATACAAAGATGTTCCAACAAACGATGAGAAGTCACTGAAGAA GGCTGTTGCAGGTCAGCCTGTAAGTGTTGCCATTGAAGCTGGCGGTAGGGCCTTCCAGCTCTACGAATCGGGTGTCTTCACGGGCCAATGCGGGACGCAA CTCGACCACGGAGTGGTGGCAGTCGGCTACGGGACCGAGAAAGGCGTGGACTACTGGATCGTAAGGAACTCGTGGGGTCCGGATTGGGGAGAGAAGGGCT ATATCAGGATGGAGCGCAATGTTGCCAAGACCAAAACAGGGAAATGTGGCATTGCCATAGAGGCTTCATATCCAACCAAGAAAGGAGGCAACCCTCCTAA ACCTGGTCCAACTCCTGCCACTCCTCCGCCCCCTCCGGTCGCTCCTCCCTCCGTTTGCGACAGCGACTACTCCTGCCCTGCTAGCACCACTTGCTGCTGC GTGTACAAGTTCCGCAGCTACTGCTTCGGATGGGGATGCTGCCCTCTCCAGTCGGCGACTTGCTGTGACGATCACTACAGTTGCTGCCCTCATGACTACC CCGTCTGTGACCTCAAGGCTGGAACTTGCAGAATGAGCAAGGACAATCCATTTGGAGTGGCAACGATGAAGAGGTTCTTGGCTAAGAGCAGCAGGCCTCA TTTACAGATGGAGGTTGTGAGCAGTGCTTGA
AA sequence Show only first row Show all	>Lus10027877 pacid=23157046 polypeptide=Lus10027877 locus=Lus10027877.g ID=Lus10027877.BGIv1.0 annot-version=v1.0 MATFFFSLLVPVLLLAAVSSALDTSIIDYNARHGNPVVPERSEAELRAMYDNWALTHRKSYHNAGFLGGAAEEKEKRFEIFKENSRFVDQHNSVERSYRV GLNRFADLTNEEYRSMYLGAKVQRKVNGSSSSDEYLFKKGDDLPASVDWREKGAVAPVKDQGQCGSCWAFSTIGAVEGINQIVTGEMITLSEQELVDCDR SVNAGCDGGLMDYAFEFIINNGGIDTEEDYPYKAADNVCDSNRKNAKVVTIDGYKDVPTNDEKSLKKAVAGQPVSVAIEAGGRAFQLYESGVFTGQCGTQ LDHGVVAVGYGTEKGVDYWIVRNSWGPDWGEKGYIRMERNVAKTKTGKCGIAIEASYPTKKGGNPPKPGPTPATPPPPPVAPPSVCDSDYSCPASTTCCC VYKFRSYCFGWGCCPLQSATCCDDHYSCCPHDYPVCDLKAGTCRMSKDNPFGVATMKRFLAKSSRPHLQMEVVSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43060			Granulin repeat cysteine prote...		Lus10027877 [exp]	0	1
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	4.2	0.9148
AT1G71740			unknown protein		Lus10042773 [exp]	4.9	0.9179
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	7.5	0.9163
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036353 [exp]	9.8	0.9005
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040217 [exp]	11.0	0.9049
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	11.9	0.8799
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	12.1	0.8934
AT1G27385			unknown protein		Lus10015781 [exp]	12.7	0.8968
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	12.8	0.9112
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	13.0	0.9050

Compare expression of checked genes

Lus10027877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.