Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19320 384 / 6e-129 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 360 / 9e-120 Leucine-rich repeat (LRR) family protein (.1) AT4G06744 301 / 5e-98 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 263 / 6e-80 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 261 / 6e-79 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 246 / 2e-75 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 243 / 4e-72 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 243 / 2e-71 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 236 / 1e-69 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G19020 239 / 2e-69 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002828 [exp] 631 / 0 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 447 / 1e-155 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10010049 [exp] 290 / 2e-93 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10014085 [exp] 251 / 2e-81 AT1G49750 224 / 2e-71 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 253 / 9e-76 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 241 / 4e-74 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 238 / 9e-71 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 233 / 7e-69 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 225 / 8e-69 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098601 [exp] 447 / 2e-153 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.001G302500 [exp] 318 / 2e-104 AT4G06744 411 / 5e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098700 [exp] 316 / 2e-103 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 310 / 4e-101 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 251 / 9e-77 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 253 / 4e-75 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 247 / 4e-74 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 251 / 4e-73 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 241 / 1e-72 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 236 / 2e-71 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027878 pacid=23156908 polypeptide=Lus10027878 locus=Lus10027878.g ID=Lus10027878.BGIv1.0 annot-version=v1.0 ATGACTACTTCACTCCTCACTCTCTTCTTCCTCACTCTAATCTTCCACTCACATTCCCCGGCCGCCGCCGCTAAAACCAGAAAAGCAATTGAAATCATCA TCGGCGGCGGCGGCATCGGCATCGGAAGCAGTTCTCCTGCTCCTTCCCCTGACTACGGCGACTGTCCTCCTCCCCCTCCTCCTCCCGAACCTGTCTGCCC CCCTCCTCTCTCTCCCCCGCCGCCGCCACCTCCACCTACGCCGCTACCACCTCCACCGCCGCCGACACCGAAAAAATCACCACCGCCTCCACCGCCCACG CCGAAACATCCTCCTCCGCCACCGCCACCTCCCACACCGAAACCTCGTCCACAACCACAGTTCGAGAACGAGCGAATCAAGAGAGCATTCTACACGATCC AAAAGTTCAAGAAGAGAATCGAGGACGATCCGTTCCACATAACCGATTCGTGGGAGGGAACTGACGTCTGCAACAAGTACAAATACAAAGGATTCACGTG CGCAAAGAGGCCGGACATCAACATGAAAGCCGTCGCCGCCGCAGACTTCAACGGCTACGGATTCAACGGCTCCAACCTCAACCTTCCGGGATTTCTCGAC GAGCTCGTCGACCTCACTTTGTTCCATGCCAATTCCAACAACTTCACCGGCAAGATCCCGCCGTACCTCGGCTCCAAAATCAAGTACCTCTACGAAATTG ACCTCAGCAACAACAAGTTCTCCGGTCTTTTCCCTAAGGAGATTCTTGACGCCGCCAACGCCTCCTTCATCGACCTCCGCTTCAACTCCTTTTCCGGCCA AGTGCCAGACAAGATCTTCAACCAAGACCTAGACGTCCTTCTCCTCAACAACAACAAGTTCACCGGATGCCTCCCGGAGAATATCGGAAACACGCCGGCG ATTTACCTAACATTAGCCTACAACCAATTCACGGGAGCGATCCCAAAATCAGTCGGAAGCTGCAAGAACCTTCTAGAAGTCCTCTTCCTGAACAACAAAT TCTCGGGCTGTTTGCCTAGCGAGATCGGGAATCTGAACAAGGCCAGAATATTCGACGTCGGAGATAACTCACTCACCGGTCCAATCCCGGGTTCGTTCGC CTGCCTGTCGGCGATGCAGAGTCTGAACCTGGCGAGGAACAAGCTGTACGGAGCAGTACCGGAAGGAGTGTGCGAGCTGCCGAGGATGACGAATCTGTCG CTGTCCGGGAATTATTTCACGCAGGTCGGGCCGGCGTGTAGAGATCTAATCAAGCAGAAGATCCTAGACGTGAGGGGGAACTGTATTCTGGATCTGCCGG GGCAGAGGTCGGCGGCGGAGTGTGCTCAGTTCTTCTCCGGGAAGCTTAGCTGTCCGAATGAGAAGTGGATGGTGGAGCATGTGCCTTGTAAGAAAGGGAA GAAGGTGGAGTACTCTCTGGAATTGGAGGCAGGGGATTCGCCGGCGCCGACGCCGTCGATGGCTTATAGTGCTCTGGACCCTAACAGGGTGAGATAG
AA sequence Show only first row Show all	>Lus10027878 pacid=23156908 polypeptide=Lus10027878 locus=Lus10027878.g ID=Lus10027878.BGIv1.0 annot-version=v1.0 MTTSLLTLFFLTLIFHSHSPAAAAKTRKAIEIIIGGGGIGIGSSSPAPSPDYGDCPPPPPPPEPVCPPPLSPPPPPPPPTPLPPPPPPTPKKSPPPPPPT PKHPPPPPPPPTPKPRPQPQFENERIKRAFYTIQKFKKRIEDDPFHITDSWEGTDVCNKYKYKGFTCAKRPDINMKAVAAADFNGYGFNGSNLNLPGFLD ELVDLTLFHANSNNFTGKIPPYLGSKIKYLYEIDLSNNKFSGLFPKEILDAANASFIDLRFNSFSGQVPDKIFNQDLDVLLLNNNKFTGCLPENIGNTPA IYLTLAYNQFTGAIPKSVGSCKNLLEVLFLNNKFSGCLPSEIGNLNKARIFDVGDNSLTGPIPGSFACLSAMQSLNLARNKLYGAVPEGVCELPRMTNLS LSGNYFTQVGPACRDLIKQKILDVRGNCILDLPGQRSAAECAQFFSGKLSCPNEKWMVEHVPCKKGKKVEYSLELEAGDSPAPTPSMAYSALDPNRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10027878 [exp]	0	1
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	7.3	0.8638
AT4G30010			unknown protein		Lus10025458 [exp]	8.1	0.8514
AT1G22520			Domain of unknown function (DU...		Lus10009454 [exp]	8.8	0.8737
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	13.7	0.8299
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	16.5	0.7853
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10029165 [exp]	25.6	0.7572
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	32.7	0.8466
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	38.6	0.8456
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10018237 [exp]	47.2	0.7629
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10028583 [exp]	48.0	0.8226

Compare expression of checked genes

Lus10027878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.