Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67210 270 / 8e-90 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT3G50220 263 / 7e-87 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT2G15440 254 / 2e-83 Protein of unknown function (DUF579) (.1) AT1G71690 173 / 3e-52 Protein of unknown function (DUF579) (.1) AT1G09610 166 / 1e-49 Protein of unknown function (DUF579) (.1) AT1G27930 164 / 7e-49 Protein of unknown function (DUF579) (.1) AT1G33800 162 / 5e-48 Protein of unknown function (DUF579) (.1) AT4G09990 160 / 4e-47 Protein of unknown function (DUF579) (.1) AT1G67330 149 / 6e-43 Protein of unknown function (DUF579) (.1) AT4G24910 131 / 8e-36 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002829 [exp] 478 / 6e-172 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10006258 [exp] 261 / 7e-86 AT5G67210 458 / 4e-163 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10041596 [exp] 238 / 6e-77 AT5G67210 465 / 8e-166 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10009378 [exp] 221 / 5e-70 AT5G67210 336 / 5e-115 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10019326 [exp] 210 / 1e-65 AT5G67210 335 / 2e-114 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 172 / 8e-52 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 172 / 9e-52 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 166 / 2e-49 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 165 / 5e-49 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G302600 [exp] 316 / 1e-107 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 315 / 2e-107 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 261 / 3e-86 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 258 / 4e-85 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 171 / 3e-51 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 169 / 7e-51 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 169 / 7e-51 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 167 / 4e-50 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 164 / 8e-49 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 163 / 3e-48 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10027879 pacid=23157026 polypeptide=Lus10027879 locus=Lus10027879.g ID=Lus10027879.BGIv1.0 annot-version=v1.0 ATGAAAACCACCGCCACACCCACAAAGCTCATCCTCTTCCACCACCACCCCCCCCCCCCCCCGCCACCTCTTCCATCCCCCACGCGCCACCGTATCTTCT TCATCCTCACCTTCTTCACCTTAGCCTTCACCCTCACTCTCTTCTCCACCACCACCGTCCCCTCCTCCACCAATTCCCCAACCACCCTCCCTTCCTCCAT CACCTCCGCCCTCCTCCATTACGCCGCCGCCAACTCCACCGCCGCCGCCCCTCACATGACTGCCGCAGAGCTCTCCTCCATCTCAGCCGCGCTCGACGCC TGTTCTCCGTCCTGCAACCTCCTTGTCTTCGGCCTCACTCACGAGACTCTCCTCTGGAAATCCCTAAATTTCCGCGGCCGTACGATGTTCCTCGACGAGA GCGAGTACTTAGTTTCCAATTTCGAGAAGAATCACCCCGAAATCGAAGCCTACGACGTCCAGTTCTCTACTAAAGTAAGCGAATCGCCCATCCTGCTCTC CTCCGCCGCGGATCTGGTGGCCTCCGACTGCCGTCCCGTTCAGAATTTATTGTTCTCCGAGTGTCGACTAGCGATCAATGACATGCCGAATCACATCTAC GACATTGACTGGGACGTCGTCCTTGTGGACGGCCCTAGAGGCTACTCCGGCGACTCTCCAGGACGGATGTCGTCGATCTTCACCGCCTCCGTCCTGGCCA GAACCGGCGGGAAGGAGAATCACAGGAAGACGAAGAAGAAGACGAATGTGTTCGTTCACGAGATCCAGAGGGAGGTGGAAAAGATCTACAGCGAAGAGTT TCTGTGCAGGGAGAATCTGGTGAGTACCGTCGACTCGCTAGCGCATTTCCGAGTTGGGAAATCATCTCCCGGCGGTGAGTTCCGGTTCTGTAAACGGCGG CGATGA
AA sequence Show only first row Show all	>Lus10027879 pacid=23157026 polypeptide=Lus10027879 locus=Lus10027879.g ID=Lus10027879.BGIv1.0 annot-version=v1.0 MKTTATPTKLILFHHHPPPPPPPLPSPTRHRIFFILTFFTLAFTLTLFSTTTVPSSTNSPTTLPSSITSALLHYAAANSTAAAPHMTAAELSSISAALDA CSPSCNLLVFGLTHETLLWKSLNFRGRTMFLDESEYLVSNFEKNHPEIEAYDVQFSTKVSESPILLSSAADLVASDCRPVQNLLFSECRLAINDMPNHIY DIDWDVVLVDGPRGYSGDSPGRMSSIFTASVLARTGGKENHRKTKKKTNVFVHEIQREVEKIYSEEFLCRENLVSTVDSLAHFRVGKSSPGGEFRFCKRR R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	0	1
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	1.0	0.8927
AT4G38100			unknown protein		Lus10002647 [exp]	2.0	0.8897
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	4.0	0.8867
					Lus10016421 [exp]	5.5	0.8638
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	5.9	0.8773
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	6.0	0.8869
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	7.4	0.8849
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	7.7	0.8776
AT3G62060			Pectinacetylesterase family pr...		Lus10038024 [exp]	11.7	0.8518
AT5G10530			Concanavalin A-like lectin pro...		Lus10007076 [exp]	12.0	0.8542

Compare expression of checked genes

Lus10027879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.