Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60170 197 / 7e-60 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) AT1G70400 141 / 1e-41 unknown protein AT5G27120 83 / 1e-17 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 81 / 4e-17 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 77 / 8e-16 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 69 / 6e-13 NOP56 homolog of nucleolar protein NOP56 (.1) AT3G12860 65 / 1e-11 NOP56-like pre RNA processing ribonucleoprotein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029168 [exp] 234 / 1e-73 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 235 / 3e-73 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10002830 [exp] 135 / 1e-39 AT1G60170 135 / 7e-39 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10004143 [exp] 85 / 2e-18 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 84 / 7e-18 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10033846 [exp] 82 / 2e-17 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 82 / 2e-17 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10017214 [exp] 60 / 5e-10 AT1G56110 783 / 0.0 homolog of nucleolar protein NOP56 (.1) Lus10021096 [exp] 60 / 7e-10 AT1G56110 782 / 0.0 homolog of nucleolar protein NOP56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176000 [exp] 241 / 1e-76 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.014G102800 [exp] 239 / 5e-76 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.013G032300 [exp] 84 / 5e-18 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.005G045600 [exp] 82 / 2e-17 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 70 / 3e-13 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 69 / 5e-13 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01798 [flax] [poplar] Nop snoRNA binding domain, fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10027881 pacid=23157082 polypeptide=Lus10027881 locus=Lus10027881.g ID=Lus10027881.BGIv1.0 annot-version=v1.0 ATGGCGATGAGGAAGGTGATGGATAATGAAGAAGGAGTGGCTATGAGGAGGAAGGCTAAGGAGCTTGGAAGAATGGCGAGGAGGGCGGTTGAGGACAGTG GATCTTCGAATTCTAGTTTGAGCTGGGGCTCCTTCCCGAACTTCAAAATTTCCCGGCTCCGTTCACAGCAACAGCTTCTCATCCTTCGTCGGCCGGTTGA GGACATCAGTAGCGGATTCAGGGGCCTCCCCAGGCGCCCGGACCCGTACATAGAGAACGAGCTTACCATCATCCACAACTTCATCCGCGCCAAGTACCGG TCCAAGTTCCCCGAGCTGGAGTCTCTCGTGCGCGATCACATTGAATACGCTCGCGTGGTGAAGAGAATCGGGAACGAGATAGATATAATCCTCGTTGATC TCGAAGGTCTTTTGCCATCAATCACCATTATGGTCGTTTCAGTGACTGCATTGACAACAAGCGGTAAACCTCTCCCCCTTGACGTTCTCGAAACGGTTAT TGATGCTTGTGATCGGATTCTAACTCTGGATTCCGCAAAGAAGAAGGTTATCGATTTTGTGGAGAGCAGAATGGGACGCATCCCGAACTTGTCTACCATC GTCTGGAGTTCCGTGGCAGCAAAGCTCATTTGCATTGCCGGTGGTCTCACTGCTTTAGCCAACATGCCTTCTTCCAATGTTGAACTTCTCGGAGCCAAGA AGAAGAGTGCAACATCATCTCAATTTCGCTTTGGTTATATTGAGCAAACGGATGGCTGGCTTCGAAATCGACACTTGCAGCCTGAGTCGATGCTGAAAGT TCAAGTCCTTGTGGAAGCCATGGAAGAACTCTTCGAGAAGAGATTGTTAAGAAGATAG
AA sequence Show only first row Show all	>Lus10027881 pacid=23157082 polypeptide=Lus10027881 locus=Lus10027881.g ID=Lus10027881.BGIv1.0 annot-version=v1.0 MAMRKVMDNEEGVAMRRKAKELGRMARRAVEDSGSSNSSLSWGSFPNFKISRLRSQQQLLILRRPVEDISSGFRGLPRRPDPYIENELTIIHNFIRAKYR SKFPELESLVRDHIEYARVVKRIGNEIDIILVDLEGLLPSITIMVVSVTALTTSGKPLPLDVLETVIDACDRILTLDSAKKKVIDFVESRMGRIPNLSTI VWSSVAAKLICIAGGLTALANMPSSNVELLGAKKKSATSSQFRFGYIEQTDGWLRNRHLQPESMLKVQVLVEAMEELFEKRLLRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027881 [exp]	0	1
AT2G26730			Leucine-rich repeat protein ki...		Lus10042135 [exp]	2.4	0.6639
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10003200 [exp]	6.9	0.6730
					Lus10006584 [exp]	11.1	0.6430
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032020 [exp]	16.1	0.6482
AT1G10380			Putative membrane lipoprotein ...		Lus10036702 [exp]	17.7	0.5238
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	21.8	0.6308
					Lus10026426 [exp]	25.9	0.6287
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	26.1	0.5701
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	26.8	0.6298
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	28.4	0.6155

Compare expression of checked genes

Lus10027881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.