Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60170 89 / 1e-21 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029168 [exp] 138 / 2e-39 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 137 / 7e-39 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10002831 [exp] 106 / 9e-31 AT1G60170 112 / 2e-30 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G176000 [exp] 125 / 1e-34 AT1G60170 591 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.014G102800 [exp] 123 / 4e-34 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09785 [flax] [poplar] Prp31_C Prp31 C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10027882 pacid=23156884 polypeptide=Lus10027882 locus=Lus10027882.g ID=Lus10027882.BGIv1.0 annot-version=v1.0 ATGAAAGAGAGATATGCAGAGACGGACATGAGGAGGCTTGCCAACAGAATGCAGTTTGGGATCCCTGAAGAGAGCTCGCTAGGTGACGGGCTAGGGGTAG GCTATGGAATGCTCGGTCAGGCAGGAAGCGGGAGGCTCCGAATTGTAGCGAGACAGAACAAACTTGCTGCTAAAGTAGCAAGAACCTATCGTAAAGTATT TTGCTATATCATTCGTTGCTTCAGGTTCAAGGAGAAGCATTATGGCGGCAGCACCTCTGGTCTGGCTTCGAGTCTGGCATTCACACCTGTGAAGGGGATT TTGCTGAGTAATCCACAAGCGTTTGCACACCAATTCGGAGGTGGAACTCGAAGTACCTACTTCTCAGAGACCGGTGCCTTTTCCAATGTTAAGAGGACCT GA
AA sequence Show only first row Show all	>Lus10027882 pacid=23156884 polypeptide=Lus10027882 locus=Lus10027882.g ID=Lus10027882.BGIv1.0 annot-version=v1.0 MKERYAETDMRRLANRMQFGIPEESSLGDGLGVGYGMLGQAGSGRLRIVARQNKLAAKVARTYRKVFCYIIRCFRFKEKHYGGSTSGLASSLAFTPVKGI LLSNPQAFAHQFGGGTRSTYFSETGAFSNVKRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10027882 [exp]	0	1

Compare expression of checked genes

Lus10027882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.