Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37880 405 / 1e-140 LisH/CRA/RING-U-box domains-containing protein (.1) AT2G22690 386 / 3e-133 zinc ion binding (.1.2) AT5G09630 301 / 6e-100 LisH/CRA/RING-U-box domains-containing protein (.1) AT3G55070 92 / 2e-20 LisH/CRA/RING-U-box domains-containing protein (.1.2) AT1G06060 42 / 0.0004 LisH and RanBPM domains containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002832 [exp] 751 / 0 AT4G37880 407 / 1e-141 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10019837 [exp] 455 / 5e-161 AT4G37880 399 / 9e-139 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10014078 [exp] 446 / 2e-157 AT2G22690 382 / 2e-132 zinc ion binding (.1.2) Lus10020487 [exp] 335 / 7e-113 AT4G37880 361 / 2e-123 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10007106 [exp] 131 / 2e-34 AT5G09630 150 / 1e-41 LisH/CRA/RING-U-box domains-containing protein (.1) Lus10030305 [exp] 97 / 1e-21 AT2G39340 935 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1) Lus10001973 [exp] 92 / 6e-20 AT2G39340 914 / 0.0 yeast Sac3 homolog A, SAC3/GANP/Nin1/mts3/eIF-3 p25 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G128600 [exp] 499 / 1e-177 AT4G37880 486 / 3e-172 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.012G127300 [exp] 478 / 4e-169 AT4G37880 469 / 1e-165 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.009G080500 [exp] 405 / 7e-141 AT4G37880 419 / 3e-146 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.001G286300 [exp] 399 / 5e-138 AT5G09630 417 / 3e-145 LisH/CRA/RING-U-box domains-containing protein (.1) Potri.008G047300 [exp] 95 / 3e-21 AT3G55070 605 / 0.0 LisH/CRA/RING-U-box domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027883 pacid=23157038 polypeptide=Lus10027883 locus=Lus10027883.g ID=Lus10027883.BGIv1.0 annot-version=v1.0 ATGGATCTGAATCCTGTCAAGGATGCATTCGATCGTGTTGCGAAGAAGCAAAAGCGATCCAGCTCCGATACTCAGGAAGTACTCGACCAGGTTGTGCAAG AAATCGAAACAGCAATCAGAACTATCCAATCCGAAACCACCCTTAGCTCCTCCGGATCCGGCTGCAAAACGGTGCTGATCGAACTCAAGAAAAAGCTGCA GGAAATCGGCCCCCTCGGTCAACTGGAAAGCAAAGATAAAGAACTGAGCATAGCCTTGAACAAGTACGCCAAGCAGCTTGACAGATCCTTCATCCCAGAC ATATTCAAGGCATACAGAGACAACATCGAATTCGACACCGGCACTTTAAACCAGATCGTTGCAAGCCATTTCTACCGAGAAGGCCTGTTCGAAATCGGGG ATCACTTCATCAACTCAGCCAATGAACAACCCCCCAATTCTGCTCTCGCATCGAGAGCCCTATTCCACGAGATGTACACAATTCTCGAAGCTGTCAAGAT TCGGGACTTGGCTCCTGCACTAGCTTGGGTCAAACAGAACGGTAATTCTTCGGACCTTCAACTCAAGCTTCACCAGCTACAGTTTGTGGAAATACTACAA AACCGGAGCAGAAAAGAAGCTCTCGACTATGCCAAGACCAACATCACGCCATTTGCCAGCAGCCATTTCGCGGAACTCCAAAAGACCATGGCATGTCTCC TCTGGTCCGGTAAACTAGACCGATCTCCATACTCCGAACTACTATCCCCAACGAATTGGACCTTGGTCTCCTCGGAGCTCACCAGGCAATTCTGTTGCAG CCTTCAAAGTCCGTTGTCGGTATCGATATCAGCGGGGATCCAAGGGCTGCCGACTCTGTTGAAGTTCGTGACCGTGATGGCTGCGACGAAGAAGTGGCAG ACGATGGAGGAGTTGCCTGTTCCGGTCGAGCTGGACGGTGCGATGCAGTTTCATTCTGTATTTGTGTGTCCGGTGTTGAAGGAGCAGTCAATAGAGGGGA ATCCTCCGATGCTGATGTCGTGCGGGCATGTGTTGTGTAAGCAGTCGATCGGTAAGATGTCGAAGAACCATACGAAGAGGTTCAAGTGCCCTTACTGCCC TACCGACATCGATTCGACAATGTGCAGAGCAGTATACTTCTGA
AA sequence Show only first row Show all	>Lus10027883 pacid=23157038 polypeptide=Lus10027883 locus=Lus10027883.g ID=Lus10027883.BGIv1.0 annot-version=v1.0 MDLNPVKDAFDRVAKKQKRSSSDTQEVLDQVVQEIETAIRTIQSETTLSSSGSGCKTVLIELKKKLQEIGPLGQLESKDKELSIALNKYAKQLDRSFIPD IFKAYRDNIEFDTGTLNQIVASHFYREGLFEIGDHFINSANEQPPNSALASRALFHEMYTILEAVKIRDLAPALAWVKQNGNSSDLQLKLHQLQFVEILQ NRSRKEALDYAKTNITPFASSHFAELQKTMACLLWSGKLDRSPYSELLSPTNWTLVSSELTRQFCCSLQSPLSVSISAGIQGLPTLLKFVTVMAATKKWQ TMEELPVPVELDGAMQFHSVFVCPVLKEQSIEGNPPMLMSCGHVLCKQSIGKMSKNHTKRFKCPYCPTDIDSTMCRAVYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	0	1
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	1.4	0.8924
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Lus10031445 [exp]	2.0	0.8821
AT2G22120			RING/FYVE/PHD zinc finger supe...		Lus10019687 [exp]	2.4	0.8525
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	6.3	0.8423
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	6.6	0.8183
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	11.6	0.8080
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	15.5	0.8196
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	16.5	0.8302
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10008352 [exp]	16.9	0.7998
AT5G59830			unknown protein		Lus10040857 [exp]	17.7	0.7324

Compare expression of checked genes

Lus10027883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.