Plant FIBer expression Database

Lus10027884 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G49645 169 / 5e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002833
[exp]
393 / 3e-141 AT3G49645 163 / 1e-50 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G091300
[exp]
181 / 3e-57 AT3G49645 219 / 4e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10027884 pacid=23157060 polypeptide=Lus10027884 locus=Lus10027884.g ID=Lus10027884.BGIv1.0 annot-version=v1.0
ATGGCGATTCAAGGCGGCAAAGAGTCCGGAGCTCAACTGAATGCGCAAACTCTACAAATACTAAAAGACTTCTTGACGAGGGTGGCGAAGCTGGAGGATC
TCGTAGCTTCCGCAAGCCGGTTTCTCGGTGGGTTTCATCAATCACTTGAGTTTCTCAGGCGACCTCCGGTAGACATGGAGTCAAAGCTGCTGAGTAAGAT
CATCGCTGCAAATGAGACGAAGAGGATGAAATCGTACATTGAATCAGGCTGCAGCAACGGCTTTGACAGAGTGCAGTACACCAGCCAGTCCAAATCAATA
CTTAACGAGCTTGAGCAGCTCATGGAGGATATGGCGGTTACAATTCGAGATTCTAATTGGCCGTTAACATCTTTCCAAGTTGAAGATCTTTGTGAGCAAC
TGGAGCGGCAAGATTTATGTCAGGGCGAGCAAGAACGTGAGGCGGCGGCACTGCTCATTGCTTCGTCCCTTGGTGTCATTTACAGCATGCTGAAGCAGGA
TTATGTAATGCAGGAGAAGATTGTCGAATCGTTGAGTCTGAAATCGACAGCAGGGGAATTGGGGAGCTATTCGTTGATGTGGTCGCTTCGGCCTTACGTT
GACGACGATATCATGCAACAAGCCTGGAGATTGATCAACTAG
AA sequence
>Lus10027884 pacid=23157060 polypeptide=Lus10027884 locus=Lus10027884.g ID=Lus10027884.BGIv1.0 annot-version=v1.0
MAIQGGKESGAQLNAQTLQILKDFLTRVAKLEDLVASASRFLGGFHQSLEFLRRPPVDMESKLLSKIIAANETKRMKSYIESGCSNGFDRVQYTSQSKSI
LNELEQLMEDMAVTIRDSNWPLTSFQVEDLCEQLERQDLCQGEQEREAAALLIASSLGVIYSMLKQDYVMQEKIVESLSLKSTAGELGSYSLMWSLRPYV
DDDIMQQAWRLIN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G49645 unknown protein Lus10027884
[exp]
0 1
AT5G63440 Protein of unknown function (D... Lus10022455
[exp]
6.7 0.6831
AT1G80100 AHP6 histidine phosphotransfer prot... Lus10011487
[exp]
12.1 0.7030
AT1G26750 unknown protein Lus10031376
[exp]
33.0 0.6907
AT3G51150 ATP binding microtubule motor ... Lus10033920
[exp]
39.0 0.6655
AT2G36740 ATSWC2 sequence-specific DNA binding ... Lus10009576
[exp]
43.0 0.6768
AT4G00830 LIF2 LHP1-Interacting Factor 2, RNA... Lus10030207
[exp]
43.1 0.6623
AT1G77280 Protein kinase protein with ad... Lus10024154
[exp]
48.5 0.6560
AT2G06010 ORG4 OBP3-responsive gene 4 (.1) Lus10020742
[exp]
50.2 0.6386
AT5G02260 ATHEXPALPHA1.10... expansin A9 (.1) Lus10033801
[exp]
59.2 0.6527
AT5G61220 LYR family of Fe/S cluster bio... Lus10021653
[exp]
61.5 0.6676

Lus10027884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.