Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34120 157 / 9e-47 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT4G36910 140 / 2e-40 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002834 [exp] 246 / 5e-81 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10004992 [exp] 103 / 1e-25 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 82 / 3e-18 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G303900 [exp] 155 / 7e-46 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 149 / 6e-44 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.009G099200 [exp] 149 / 6e-44 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G140800 [exp] 147 / 4e-43 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Lus10027885 pacid=23156971 polypeptide=Lus10027885 locus=Lus10027885.g ID=Lus10027885.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTTCTACTTGTTTCACTTCAGTTATTATTAATCATTCTCATTCCTCACTCCTTTCTCTGCTCCCTTCCGCCTTTACCCTCAACTCCTCAT GCCGCCCTCCTCCTCCGCCGCCGCTCCGCCGTCTCAGCTTTTCTTATCGGCAGCTGCCACGTGTCGTCGTCGCCTTTGGTTCTCTGACAAACTCTGCTCC GGCGAGAAATGGGACGTATAAAGTGGGGGATTTCATGACCAGGAAGGATGGTTTGTTCGTTGTTAAGCCTTCCACTAGCGTTGATGAAGGTAAGGTTTCG TTCAAGTTTGGTGATTTAAATTCCCGTGTGTCAAAAGTTTCGAACTTTTTACCTTTTGTTGTACTACGAGTTTCACCGAGTATAATTGTCATTGTAAATT CCTATGAGTGGTACTCTGTGATCAGTGGAGTTTTTGTTGCTGTTGTGGTGCGTTGGTGGTTTTTCTTGCGTTTGAGATATCACGAAGAGGTTATTGTGGA GAAGAGAGTTACAGGCTTCCCTGTGATTGATGATCAATGGAATTTGGTTGGTGTTGTTTCTGATTATGACCTGTTAGCACTCGACACCATCTCAGGTGGC AATGACAATGACAGCAACTTGTTCCCCGATGTCGATAGCACTTGGAAAGCGTTTAACGAGATCCAGAAGCTGGTAGGGAAGAACCATGGTAAAGTCGTTG GTGATCTGATGACTCCTAATCCCCTCACTGTTCGCGAAAACACAAATCTAGAAGATGCCGCCAGAAGTCCATGTTTGCCTCTCTCTGAGTTGCTTCCTCG AGCTACAACTGCACAAAACCTCTATTGTCCTCCTATTGGACAATGGTTGAAGAGAACTGGTGTAACTGATAATTAA
AA sequence Show only first row Show all	>Lus10027885 pacid=23156971 polypeptide=Lus10027885 locus=Lus10027885.g ID=Lus10027885.BGIv1.0 annot-version=v1.0 MAASSTCFTSVIINHSHSSLLSLLPSAFTLNSSCRPPPPPPLRRLSFSYRQLPRVVVAFGSLTNSAPARNGTYKVGDFMTRKDGLFVVKPSTSVDEGKVS FKFGDLNSRVSKVSNFLPFVVLRVSPSIIVIVNSYEWYSVISGVFVAVVVRWWFFLRLRYHEEVIVEKRVTGFPVIDDQWNLVGVVSDYDLLALDTISGG NDNDSNLFPDVDSTWKAFNEIQKLVGKNHGKVVGDLMTPNPLTVRENTNLEDAARSPCLPLSELLPRATTAQNLYCPPIGQWLKRTGVTDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	0	1
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	1.0	0.9328
AT2G22590			UDP-Glycosyltransferase superf...		Lus10012726 [exp]	2.0	0.9007
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	2.4	0.9132
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	2.4	0.9088
AT5G39865			Glutaredoxin family protein (....		Lus10007256 [exp]	4.2	0.8799
AT3G43720			Bifunctional inhibitor/lipid-t...		Lus10008401 [exp]	5.1	0.8747
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	6.5	0.8930
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10005556 [exp]	6.9	0.8749
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	7.4	0.8958
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	7.7	0.8776

Compare expression of checked genes

Lus10027885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.