Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49760 650 / 0 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 648 / 0 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G23350 563 / 0 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G22760 508 / 9e-173 PAB3 poly(A) binding protein 3 (.1) AT1G71770 483 / 1e-162 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT2G36660 359 / 1e-115 PAB7 poly(A) binding protein 7 (.1) AT1G34140 347 / 8e-114 PAB1 poly(A) binding protein 1 (.1) AT3G16380 315 / 8e-100 PAB6 poly(A) binding protein 6 (.1) AT2G18510 120 / 1e-29 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 104 / 7e-24 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002835 [exp] 821 / 0 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 669 / 0 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 652 / 0 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10014392 [exp] 404 / 2e-132 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10023885 [exp] 390 / 3e-127 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 388 / 3e-126 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 389 / 2e-121 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021396 [exp] 290 / 9e-90 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10019838 [exp] 145 / 7e-38 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 712 / 0 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 683 / 0 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 671 / 0 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 671 / 0 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 535 / 0 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 535 / 0 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.001G191500 [exp] 336 / 2e-107 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.007G028300 [exp] 128 / 4e-32 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 109 / 1e-25 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G128100 [exp] 110 / 2e-25 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10027886 pacid=23157044 polypeptide=Lus10027886 locus=Lus10027886.g ID=Lus10027886.BGIv1.0 annot-version=v1.0 ATGGCTCAGGTTCAAGCGCAAGGTGTGGTGAACGGCGGTGCTGCCGCGGCTGCGGCTGCAGCCAACAACAGCAACAATAACAACAACCTGCATTTCACGA CGACTTCGCTCTACGTCGGCGATCTGGATTTTAATGTCACCGAGGCGCAGTTGTACGATCTGTTCAGTCAGGTTGGGCAGATTGTTTCGATTCGTGTTTG CAGGGACTTGAGCAGCAGGAGGTCTCTGGGCTATGCTTATGTCAACTTCACCAATGGTCAAGATGCTGCCAGGGCTTTGGACATGCTCAATTTCACTCCG ATCAATGGGAGACCTGTTAGAATAATGTATTCCCACCGTGATCCTAGCATACGCAGAAGTGGTGCTGGAAATATATTTATTAAGAATTTGGACAAGGCCA TTGACCACAAAGCATTGCATGAAACATTTTCGGCCTTTGGGAACATTCTCTCCTGCAAGGTGGCCACTGATCCTACTGGCCAGTCAAAAGGTTATGGATT TGTTCAGTATGATACTGATGAAGCTGCTCAGATGGCCATTGAGAAACTGAATGGCATGCTGATAAATGACAAGCAAGTTTACGTTGGGCCTTTCCTCCGC AAGCAGGAAAGAGACTCTGCAAATGAGAAGACAAAGTTCAACAATGTCTATGTGAAGAACCTTGGCGATGCTACAACTGATGATGAGTTGAAGAAGGTTT TTGGTGAGTTTGGACCGATCACCAGTGCTGTGGTTATGAGGGATGGAGATGGAAAATCCAAATGCTTTGGTTTTGTAAACTTTGAGAATGTTGATGATGC TGCTAGAGCTGTTGAGGCTCTTAACGGGAAGAAAATTGATGACAAGGAGTGGTATGTCGGCAAAGCCCAGAAAAAATCTGAGAGGGAAAATGAATTGAAA CAAAAATTTGAGCAGACAATGAAAGAGGCTGCTGATAAGTTTCAAGGTGCTAACTTGTACATTAAAAACCTAGATGATAGCATAGTTGATGAAAAGCTGA AGGAATTGTTCTCCCCCTTTGGTACAATAACATCATGCAAGGTCATGCGAGATCCTAGTGGTGTAAGCAGAGGCTCAGGATTTGTTGCATTCTCCACTCC CGAAGAAGCCAACAGAGCTCTTTCGGAGATGAATGGCAAGATGATTGTCAGCAAACCATTGTATGTTGCTCTTGCCCAGAGGAAGGAAGATCGAAGAGCC AGGCTGCAGGCTCAATTTTCTCTGTTGCGACCGGTAGCAATGCCGCCCTCTGTTGCACCTCGCATGCCGATGTATCCCCCTGGGGGACCAGGAATGGGAC AGCAAATTTTCTATGGTCAAGCCCCACCTGCTATGATGCCTCCTCAGCCTGGATACGGGTATCAGCAGCAACTTGTGCCTGGAATGCGCCCAGGTGGTGG CCCTATGCCGAATTACTTTGTTCCGATGGTTCCTCCGGGTCAGCAAGGCCAGCGCCCCGGTGGTGGTCGTCGAGCAGGAGCTGGTCAGCAGTCCCAGCAA CAAGTTCCGCTCATGCAGCAGCAGCAGATGCTTCCAAGGGGCCGGGTGTATCGCTATCCACCAGGCCGTGGAGGCATGCCTGAAGTTCCCATGGGTGGTG CTGCTGGACCTGGAGGAATGCTTTCTGTTCCCTATGACATGGCTGGTGGTATGCCGATGCGTGGCGATGCAGGACTCTCTCAGCCGATCCCGATTGGTGC TTTGGCTACTGCCCTTGCCAATGCAACTCCTGAAGAACAGAGGACGATGCTTGGAGAGAACCTGTATCCGCTGGTGGAGCAGCTGGAGCCGGAAGCTGCA GCTAAGGTGACGGGAATGCTCCTGGAGATGGACCAGACCGAAGTGCTGCACTTGCTCGAGTCACCCGAGGCATTGAAGGCTAAGGTTGCAGAGGCCATGG ATGTGCTGAGGAGCGTGCAACAGCATCAGGCGAGCGGCGCAGCTGAACAGCTGTCGTCCCTGTCGTTGGAATGA
AA sequence Show only first row Show all	>Lus10027886 pacid=23157044 polypeptide=Lus10027886 locus=Lus10027886.g ID=Lus10027886.BGIv1.0 annot-version=v1.0 MAQVQAQGVVNGGAAAAAAAANNSNNNNNLHFTTTSLYVGDLDFNVTEAQLYDLFSQVGQIVSIRVCRDLSSRRSLGYAYVNFTNGQDAARALDMLNFTP INGRPVRIMYSHRDPSIRRSGAGNIFIKNLDKAIDHKALHETFSAFGNILSCKVATDPTGQSKGYGFVQYDTDEAAQMAIEKLNGMLINDKQVYVGPFLR KQERDSANEKTKFNNVYVKNLGDATTDDELKKVFGEFGPITSAVVMRDGDGKSKCFGFVNFENVDDAARAVEALNGKKIDDKEWYVGKAQKKSERENELK QKFEQTMKEAADKFQGANLYIKNLDDSIVDEKLKELFSPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEANRALSEMNGKMIVSKPLYVALAQRKEDRRA RLQAQFSLLRPVAMPPSVAPRMPMYPPGGPGMGQQIFYGQAPPAMMPPQPGYGYQQQLVPGMRPGGGPMPNYFVPMVPPGQQGQRPGGGRRAGAGQQSQQ QVPLMQQQQMLPRGRVYRYPPGRGGMPEVPMGGAAGPGGMLSVPYDMAGGMPMRGDAGLSQPIPIGALATALANATPEEQRTMLGENLYPLVEQLEPEAA AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVQQHQASGAAEQLSSLSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	0	1
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	1.0	0.9868
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	3.5	0.9538
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	5.8	0.9618
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	7.7	0.9448
AT5G41190			unknown protein		Lus10001487 [exp]	8.5	0.9496
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10042588 [exp]	10.2	0.9233
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	11.6	0.9456
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	13.4	0.9290
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	14.9	0.9328
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	17.5	0.9393

Compare expression of checked genes

Lus10027886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.