Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34050 461 / 7e-167 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G26220 279 / 2e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G67980 258 / 5e-87 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G24735 235 / 6e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67990 234 / 1e-77 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G62000 162 / 6e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 149 / 1e-43 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002837 [exp] 506 / 0 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 486 / 6e-177 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014074 [exp] 486 / 8e-177 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034584 [exp] 238 / 2e-79 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10012913 [exp] 236 / 3e-78 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009484 [exp] 231 / 3e-74 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10021804 [exp] 157 / 7e-48 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10036339 [exp] 159 / 1e-47 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 106 / 2e-27 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099800 [exp] 460 / 8e-167 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G304800 [exp] 457 / 1e-165 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.018G070300 [exp] 275 / 9e-94 AT4G26220 325 / 1e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136600 [exp] 251 / 2e-84 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.010G104400 [exp] 245 / 5e-82 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 153 / 3e-45 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G104400 [exp] 43 / 0.0001 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01596 [flax] [poplar] Methyltransf_3 O-methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10027888 pacid=23156999 polypeptide=Lus10027888 locus=Lus10027888.g ID=Lus10027888.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGCAGAAGAGCAGCAGTGAGAATGTCAGCCGGCACCAGGAAGTCGGCCACAAGAGCCTCCTCCAGAGCGACGCCCTTTACCAGTATATTC TCGAGACGAGTGTTTACCCTAGAGAGCCAGAGTCCATGAAGGAGCTCAGAGAAGTCACAGCCAAACACCCCTGGAACATAATGACGACGTCGGCCGACGA AGGACAGTTCCTGAACATGCTGTTGAAGCTCATCAACGCCAAGAACACCATGGAGATCGGCGTCTACACGGGTTACTCCCTCCTCGCCACCGCCCTCGCT ATCCCCGACGACGGCAAGATCTTGGCCATGGACATCAACCGGGAGAACTACGAGATCGGACTTCCGATCATCGAGAAGGCCGGCCTAGCTCACAAGATCG AGTTCCGTGAAGGCCCTGCCTTGCCGGCGCTGGACCTGATGGTCGAAGACAAATCGTTGCACGGGACTTATGATTTCATATTCGTGGACGCGGACAAGGA CAACTACATCAACTACCACAAGAGGTTGATCGATCTGGTGAAAATCGGGGGAGTGATCGGGTACGACAACACCCTATGGAACGGGTCGGTGGTCGCGCCT CCCGACGCTCCGCTGAGGAAGTACGTTAGGTACTACAGGGATTTCGTGCTCGAGCTTAACAAGGCGCTCGCGGCGGACCCCAGGATCGAGATTTGCATGC TCCCCGTCGGCGATGGAATCACTCTCTGCCGTCGGATCAGTTGA
AA sequence Show only first row Show all	>Lus10027888 pacid=23156999 polypeptide=Lus10027888 locus=Lus10027888.g ID=Lus10027888.BGIv1.0 annot-version=v1.0 MAEEQKSSSENVSRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELREVTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALA IPDDGKILAMDINRENYEIGLPIIEKAGLAHKIEFREGPALPALDLMVEDKSLHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIGYDNTLWNGSVVAP PDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	0	1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	1.7	0.9870
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	2.0	0.9867
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10042658 [exp]	2.8	0.9801
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	3.5	0.9792
AT1G48850		EMB1144	embryo defective 1144, chorism...		Lus10037189 [exp]	4.9	0.9778
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	5.7	0.9752
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	6.5	0.9821
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	7.1	0.9796
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	7.3	0.9765
AT2G44260			Plant protein of unknown funct...		Lus10017579 [exp]	7.9	0.9470

Compare expression of checked genes

Lus10027888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.