Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00990 572 / 0 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT3G07610 483 / 1e-153 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G11950 413 / 1e-128 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 412 / 5e-128 transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 283 / 2e-80 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 189 / 4e-49 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002391 [exp] 1632 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10015260 [exp] 994 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10025380 [exp] 625 / 0 AT3G07610 516 / 8e-170 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 586 / 0 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002051 [exp] 553 / 0 AT3G07610 172 / 1e-44 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 412 / 1e-127 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10037812 [exp] 358 / 1e-107 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 310 / 4e-90 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10002052 [exp] 281 / 1e-88 AT1G62310 199 / 5e-60 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G091200 [exp] 685 / 0 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G082901 [exp] 650 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.015G012800 [exp] 634 / 0 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 412 / 5e-126 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.004G006200 [exp] 390 / 6e-118 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G027000 [exp] 364 / 4e-112 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.013G019000 [exp] 322 / 5e-94 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 287 / 2e-81 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.011G041400 [exp] 271 / 6e-76 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10027890 pacid=23157052 polypeptide=Lus10027890 locus=Lus10027890.g ID=Lus10027890.BGIv1.0 annot-version=v1.0 ATGGAGGACGAGGCGGCTTCGAACAAGGTCGAAGAAGGAGCGATTGGAAATCTTGAGGCGGTCGAGAAGGAAGATACACCTGGAGGAGGTCGGAATTTTG AGGAGAAGGAGAGCGACACGATGAATGGAGGAGTTGAGAACGGGAACGAGACTGTCAATGGTAAAGAAGAAGCGATTGATGCAATGGAGGTGGAGGTCCA AGGTCTTGCGAGCGTTGAGGCGGTCAAGAAGGAAGATACTTCGCCGTCGCTGGAACGCGATGGAGGGGATCGGAATCTTGAGGAGAAGGAGAGTGATGCG AAGATGAATGGAGGAGGTGAGAATGGCACTGCGACTGAGAATGGGACAGTCTACGGTGATGAAGAAGAAGCGGATGAAGAGGCTAATGGAGAGCCTTCTA AAAAGAGAGGAAGGAAAAAAGGTACGAAAAACCAGGGACGAAAGAGTTCGGAGCCTGTTCAGGGACCGCGTCGCAGTAGCCGAGTTCGTAAAAAAGTGAG CGTTGCGGAGCCCGATTCGAGTTCTGAGAGTTCTGAGAGTGAGGATGCTTTACCTGTGACAAAGCGACGGGAGACTTCTAAGCCAGTTGAGGAAGACCGT CGCAGCGGTAGCCGAGACCGTATAAAAACGGCGAGATATGCCGACTCCGTGTTGAGTTCTAAGGAGAAGCTTGGTTCAACTAAGAGAAAGCAGCGACCGG AGAAGAGTGATACCAAGCCTAGCAAGGTGCCTAAAAAAGAGGAAAGTTCTGGTCTACAGATACGAGATAAAGTGTATGGAGATCTCGCCTGTTTGGAAAG GAACCGCGAGTTTACAGAGAACTACTGTCTGATGTGCCATCAATGCCAGAGGAATGACAAGGGTAGTGTTGTTCGTTGCACCAAATGTAAGACTAAGCGA TACTGCTTTCCCTGCATAGAGAGATGGTATCCTAAGATGACTCATGATGAAGTTGCAGCTGCCTGCCCTTTTTGCCTTAACAATTGTAATTGTAAATCAT GCATGCGTCAGGATGTGGAAATGAAGGATCTGAAGTCTCGGTTGGAGGTGCAACTAACTCCCCTTGAAATCAAACGACATGCTGAATACATGTTGCAAAT GCTCTTACCCTTCTTGAAGCGGATTGATGAAGATCAACTGCTTGAGAGAAGGATTGATGCAGCAATCCTAGATCTTGAAGATATAAAGGTGCAGGAAACT GAATGTCCATCAGATGAGCGCATGTACTGTGATATCTGCAAGACTGCTATATTTGACTACCACAGGAACTGTTCAGAATGTGAATCTGACATTTGCCTTT TCTGTTGCCGTGAGATCCGTGAGAATAATCTCCGGGGCAATCTGCCAAGTGTAGTTATTGAATATGAATGCAAGGGGTTTGACTATTTACATGGTGGTAG AACTGACGAGAATAAAAAAACTCGTCGTAGTTCACGTGTTATACTGCCTCCTGAGATGTCTGTCAATCTGCAACCCAAATCTGGTTGGAAAGCCAATGGA GATGGTGGCATTAGTTGTGCTTGTGGTTCTGGCATTTTAGAACTCAAAACTTTGTATTCTGGTAATTGGGTCTCAAAGTTGGTGGAGAGAGCAGAAGGTC TTGTTAACGGGTATGATGTTGTACCGGATGTACTGACGACTAAGAAATGTGCATGCTTTAATTGTAATGGGGATCTAGAAGTTCAACGTGATAAGGTAAT AGAGGCTTCGTCTCGTAATGACTCAGATGATAACTATTTGTTCTATCCAAAGGCTAAGAATTTGACAGAAGAAGATTTTGAGCATTTTCGTCACCATTGG ATGAAAGCTGAACCTGTCCTCGTCAGCAATGTTCTTGAAACTGGGTCTGGGTTAAGCTGGGAGCCTTCGGTTATGTGGCGTGCCTTCCGCCAAATAAAGA ATGAGAAACACGATACACTCTTGGATGTGAAGGCGCTAGATTGTTTGGATTGGTGCGAGGTTGATGTTAATGTCGCCAAGTTCTTCAAAGAATACTCACT GGGTGATTTTGACGAGAAGGAATGGCCTCGGATTCTGAAGCTTAAAGACTGGCCACCATCTGCTATGTTCGATGACCGTTTGCCTCGACATGGTGCTGAG TATACTTGCTGTTTGCCCTTTAAAGAGTATACTCATCTTGATAAAGGTCCTCTAAATCTTGCATCCAAACTTCCACCAAAGTCTCTGAAGCCTGACGTTG GGCCAAAGACTTATATAGCTTATGGTTTCCCTCATGAGCTTGGGCGTGGAGATTCTGTCACTAAGCTCCATTGTGACATGTCTGATGCTGTTAATATTTT GGCACACTCAATTGAGATTGGCTATAAAGGCAATCAGCTTGCCAAAATTGAAATATTGAAAAAACAGCACTTTGAGCAAGACAAAAGGGAGTTGTATGGT ATTGGTGAACCCATGGATGGGGTTGATGAAGAGAACAACAACAGCAATGAAGATGAACATCACCAAAGTTCAGAGGCTGGTGAAATATCAAACAGTTCAG ACACTAAACTGGAAAATGCTCCTCCTCAGACATCACAATTGAACGGTGTGGAGACTCAGACGAAAAGGACCGAGTCTAATGATGTGTTGAACCGTTTGGA GACTACAGTGGAAAGGGTTGAGTGTGAGGATGCGCAGAACAGTTTTGATTTTGATCAAGTGACAACGACCAAGAACGACAAAACATCATGCAGTATGAAG ATTGATCCGGAAAACCAAGCAGAACGGTCCAACAGTTCGGAGAAAGAAAACGTGAAGGAAAATGGAGATGAAGCTTCAGAGATGCAGAGAATTGACACAG TGGAGGGAGGTGCTCTATGGGACATCTTCCGCCGAGAAGATGTTCCCAAGCTGGAGGAATATCTTCTCAAGCACTTCAAAGAGTTCAGGCACATTCATTG TGTTCCTGTGCAAGAGGTGATTCATCCCATACATGATCAATCCTTTTATTTGTATGAAGAACATAAACGGAAGCTGAAAGAAGAATATGGTATTGAACCT TGGACATTTGTCCAGAAACTTGGTGATGCTGTCTTTATACCCGCCGGCTGTCCTCATCAAGTGAGAAACTTGAAGTCATGCATCAAAGTAGCATCAGACT TTGTCTCGCCCGAAAACGTCGGAGAGTGCATTCGTCTCACAGAGGAGTTCCGCCTTCTCCCTATGAACCATCGTTCAAAGGAAGACAAGTTGCAGGTTCG GTTCATGACTCTGTAA
AA sequence Show only first row Show all	>Lus10027890 pacid=23157052 polypeptide=Lus10027890 locus=Lus10027890.g ID=Lus10027890.BGIv1.0 annot-version=v1.0 MEDEAASNKVEEGAIGNLEAVEKEDTPGGGRNFEEKESDTMNGGVENGNETVNGKEEAIDAMEVEVQGLASVEAVKKEDTSPSLERDGGDRNLEEKESDA KMNGGGENGTATENGTVYGDEEEADEEANGEPSKKRGRKKGTKNQGRKSSEPVQGPRRSSRVRKKVSVAEPDSSSESSESEDALPVTKRRETSKPVEEDR RSGSRDRIKTARYADSVLSSKEKLGSTKRKQRPEKSDTKPSKVPKKEESSGLQIRDKVYGDLACLERNREFTENYCLMCHQCQRNDKGSVVRCTKCKTKR YCFPCIERWYPKMTHDEVAAACPFCLNNCNCKSCMRQDVEMKDLKSRLEVQLTPLEIKRHAEYMLQMLLPFLKRIDEDQLLERRIDAAILDLEDIKVQET ECPSDERMYCDICKTAIFDYHRNCSECESDICLFCCREIRENNLRGNLPSVVIEYECKGFDYLHGGRTDENKKTRRSSRVILPPEMSVNLQPKSGWKANG DGGISCACGSGILELKTLYSGNWVSKLVERAEGLVNGYDVVPDVLTTKKCACFNCNGDLEVQRDKVIEASSRNDSDDNYLFYPKAKNLTEEDFEHFRHHW MKAEPVLVSNVLETGSGLSWEPSVMWRAFRQIKNEKHDTLLDVKALDCLDWCEVDVNVAKFFKEYSLGDFDEKEWPRILKLKDWPPSAMFDDRLPRHGAE YTCCLPFKEYTHLDKGPLNLASKLPPKSLKPDVGPKTYIAYGFPHELGRGDSVTKLHCDMSDAVNILAHSIEIGYKGNQLAKIEILKKQHFEQDKRELYG IGEPMDGVDEENNNSNEDEHHQSSEAGEISNSSDTKLENAPPQTSQLNGVETQTKRTESNDVLNRLETTVERVECEDAQNSFDFDQVTTTKNDKTSCSMK IDPENQAERSNSSEKENVKENGDEASEMQRIDTVEGGALWDIFRREDVPKLEEYLLKHFKEFRHIHCVPVQEVIHPIHDQSFYLYEEHKRKLKEEYGIEP WTFVQKLGDAVFIPAGCPHQVRNLKSCIKVASDFVSPENVGECIRLTEEFRLLPMNHRSKEDKLQVRFMTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10027890 [exp]	0	1
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Lus10041617 [exp]	2.4	0.9636
AT4G15140			unknown protein		Lus10010477 [exp]	2.6	0.9552
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10023028 [exp]	3.2	0.9580
AT5G11550			ARM repeat superfamily protein...		Lus10011691 [exp]	3.3	0.9498
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	4.9	0.9560
AT4G02800			unknown protein		Lus10000658 [exp]	5.1	0.9636
AT4G17000			unknown protein		Lus10035651 [exp]	5.7	0.9607
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10005931 [exp]	7.7	0.9526
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	8.2	0.9597
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002391 [exp]	8.5	0.9392

Compare expression of checked genes

Lus10027890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.