Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 523 / 1e-175 ARA12 Subtilase family protein (.1) AT4G34980 522 / 5e-175 SLP2 subtilisin-like serine protease 2 (.1) AT3G14067 506 / 1e-168 Subtilase family protein (.1) AT2G05920 499 / 3e-166 Subtilase family protein (.1) AT3G14240 492 / 3e-163 Subtilase family protein (.1) AT5G51750 489 / 6e-162 ATSBT1.3 subtilase 1.3 (.1) AT1G01900 472 / 2e-155 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 452 / 6e-148 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G67090 436 / 5e-142 Subtilisin-like serine endopeptidase family protein (.1) AT5G45650 427 / 7e-138 subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002392 [exp] 1449 / 0 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10002393 [exp] 1019 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10018721 [exp] 602 / 0 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10000379 [exp] 599 / 0 AT5G67360 171 / 2e-47 Subtilase family protein (.1) Lus10024814 [exp] 570 / 0 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10024815 [exp] 546 / 0 AT5G67090 543 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 543 / 0 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009748 [exp] 535 / 7e-180 AT5G67090 601 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10033431 [exp] 521 / 3e-174 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 1023 / 0 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 658 / 0 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.014G026700 [exp] 570 / 0 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 568 / 0 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 565 / 0 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026500 [exp] 560 / 0 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.001G163600 [exp] 527 / 7e-177 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 527 / 9e-177 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 524 / 1e-175 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.006G141200 [exp] 521 / 1e-174 AT2G05920 1103 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10027891 pacid=23156905 polypeptide=Lus10027891 locus=Lus10027891.g ID=Lus10027891.BGIv1.0 annot-version=v1.0 ATGGCTCCAATTCTTAGGTTTCCCATTCTTTTCCTCCTCTTCTCACTGGCCACGTCAATCGCCACGTCATCCGTCCGCAAGACCTACATCGTCCACATGG ACAAATCCGCAACTCCGAGTATCTTCTCCATGCCACATGATTGGTACATGTCGATACTCTCGTCTTTGTCATCGGCTGACACAGACGACGAACAACCTAT CCATCTCTACACCTACAAGCACGTCATCAATGGATTCAGTGCTGTCCTCTCACAAGCCGAGCTCGACAAGCTTGAGCAGATGCATGGCCACGTGGCCTCG TTCCCTGAATCCTACGGCAGTCGACACACCACCCACTCACCAAGATTCCTGGGACTAAACAAACACACAGGCTTGTGGCCAGCTGGCAAGTTTGGTTCTG ACGTAATCATAGGTGTACTCGACACAGGAATTTGGCCCGAAAGTGAGAGTTTCAACGACGAGCTCATGCCTCCAGTGCCTGATAGATGGCGAGGAATCTG TGAAAGTGGAGTTGAATTCAATGCTTCCAATTGCAATAAGAAGTTGATTGGCGCAAGGAAATTCAGCAAAGGAATGGAGCAACAAGGCTTAAACATATCA ACAACTTACGACTACGACTCTCCCCGTGATTACCTCGGTCATGGAACTCACACCTCGTCAACGGCAGCCGGAAGCAGAGTCTCGAACGTCGACTACTTCG GTTACGCACGCGGAACAGCCACCGGAATCGCTCCGATCGCCAGGCTAGCAATGTACAAGGTGTTGTTTGACGACGATGGCATGGACGTTGATAAGTCGTA CGATGCGGCTGAGACGGACGTCCTCGCGGGGATGGACCAAGCCATCGAAGATGGCGTCGACATCATGTCGTTGTCTCTGGGGTTCTTCAAGACCCTGCCG TTCTACAAGAACCCCATCGCGATCGGAGCGTTCGCCGCCATGAAAAGGGGCATCTTTGTAGCGTGCTCGGCCGGAAATGGTGGCCCCCACGGATACACAA CGCTTAATGGAGCTCCCTGGATCACGACAGTGGGTGCTGGCACTCTCGATCGTGACCTTGGAGCTCGGATCGTCCTCGGAGAGGAAGATTTGATTGTGAC CGGACATTCGATGTATCCGGAGAATCTGTACATAGACAGAGTTCCTCTGTATTTCGGGAGAGGGAATCGGAGTATGGAGACTTGTGACGTTATCGACCTA AGTCAAGCCGCGGGGAAGTTCGTGTTTTGCGATCATGATGACGACAATAACGATGATCGCAATGCCACATTAGGGTTTAAACCGAGATACGAGACCTTTT ATAATAAAGATGATTCTGGCGACGACAATGGTGCCGTCATCGCTGGAATAATCAAAAGCATGGATGAGGCCGATGTAGAGTTCTACGGCCACGCTAAGGA TTTCGACACGCCATATGTCATGGTGAGCACGAAAATTGGAGAATCGATTAAGCGTTACATACTCAACTCAACTAACTCGACCGTTAGTGTAAACTTTGGT GTGACAATTTACGGGCACGAATCAGCTCCTAAGGTCACATACTTCAGTTCAAGAGGACCTGATGAGAGGTCCCCTTGGATATTGAAGCCCGACCTTATAG CTCCCGGCTACGACATCATAGCCGCGTGGGCTCCAAATAGGGCTTTTGCCCCTATTCGAGGAGGAGACGATTACTTGCAGACGGACTATGCTATCATCTC AGGTACATCAATGTCGTGTCCACACATAGCCGGGTTGGCTGCATTGATGAGATCAGCACACGAAGACTGGACAGTGGCCGCGATCCGGTCAGCCATGATG ACAACATCATACATTACAGATAATGTCGGAGGTACAATCATCGATATGACGACACGAGAGGCAGGAACACCCCTTGATTTCGGGTCGGGACATGTGAATC CCAACAAGGCATTGGATCCTGGCTTGGTCTACGACATCGGGACCAATGACTATGTGAACTACCTGTGTGCAATGAACTATACTAAGTCCGAGATAGGGAT CATCACTGGGGAGTCCCCGAATTCAATCAGTTGCGAATTCGGGACCCTCGATCTGAACTACCCATCCTTCATGGTGGTGATGAACAACACAAATTCGCAA AACATGACGTTTTCGAGGGTGGTAACGAATGTCGCGGAAGGCGGCTCAGTTTACCATGCTGTGGTGGAGATTTCTAGTGGCATGACGGCTGTTGTGGAGC CTTCTGTGATCAGTTTTGAAAGGCAATATAGTACGGCTGCGTTTAACTTGACTGTGGATGTCGTTTTGGGGGGTGGGTTTGGTGGAGGTAAGAGTGATTA CATTGGGAACTATGGGTTTTTGAGTTGGGTTGAGGTGAACGGGACTCATGTTGTTAGGAGTCCAATTGTGTCCGCAATGGCATCTCCTAAGACTTGA
AA sequence Show only first row Show all	>Lus10027891 pacid=23156905 polypeptide=Lus10027891 locus=Lus10027891.g ID=Lus10027891.BGIv1.0 annot-version=v1.0 MAPILRFPILFLLFSLATSIATSSVRKTYIVHMDKSATPSIFSMPHDWYMSILSSLSSADTDDEQPIHLYTYKHVINGFSAVLSQAELDKLEQMHGHVAS FPESYGSRHTTHSPRFLGLNKHTGLWPAGKFGSDVIIGVLDTGIWPESESFNDELMPPVPDRWRGICESGVEFNASNCNKKLIGARKFSKGMEQQGLNIS TTYDYDSPRDYLGHGTHTSSTAAGSRVSNVDYFGYARGTATGIAPIARLAMYKVLFDDDGMDVDKSYDAAETDVLAGMDQAIEDGVDIMSLSLGFFKTLP FYKNPIAIGAFAAMKRGIFVACSAGNGGPHGYTTLNGAPWITTVGAGTLDRDLGARIVLGEEDLIVTGHSMYPENLYIDRVPLYFGRGNRSMETCDVIDL SQAAGKFVFCDHDDDNNDDRNATLGFKPRYETFYNKDDSGDDNGAVIAGIIKSMDEADVEFYGHAKDFDTPYVMVSTKIGESIKRYILNSTNSTVSVNFG VTIYGHESAPKVTYFSSRGPDERSPWILKPDLIAPGYDIIAAWAPNRAFAPIRGGDDYLQTDYAIISGTSMSCPHIAGLAALMRSAHEDWTVAAIRSAMM TTSYITDNVGGTIIDMTTREAGTPLDFGSGHVNPNKALDPGLVYDIGTNDYVNYLCAMNYTKSEIGIITGESPNSISCEFGTLDLNYPSFMVVMNNTNSQ NMTFSRVVTNVAEGGSVYHAVVEISSGMTAVVEPSVISFERQYSTAAFNLTVDVVLGGGFGGGKSDYIGNYGFLSWVEVNGTHVVRSPIVSAMASPKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	0	1
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	1.0	1.0000
					Lus10002313 [exp]	1.4	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	1.7	1.0000
					Lus10006296 [exp]	2.6	1.0000
					Lus10003831 [exp]	2.8	1.0000
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10010970 [exp]	3.0	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	3.2	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	3.2	1.0000
					Lus10006010 [exp]	3.5	1.0000
					Lus10024762 [exp]	3.5	1.0000

Compare expression of checked genes

Lus10027891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.