Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 107 / 1e-26 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT2G05920 106 / 5e-26 Subtilase family protein (.1) AT3G14067 100 / 7e-24 Subtilase family protein (.1) AT5G67360 99 / 1e-23 ARA12 Subtilase family protein (.1) AT1G20160 99 / 2e-23 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G01900 97 / 6e-23 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT5G67090 96 / 2e-22 Subtilisin-like serine endopeptidase family protein (.1) AT4G34980 95 / 4e-22 SLP2 subtilisin-like serine protease 2 (.1) AT5G59090 91 / 9e-21 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G03620 88 / 1e-19 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002393 [exp] 374 / 6e-126 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10027891 [exp] 236 / 2e-72 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10027895 [exp] 228 / 5e-72 AT2G04160 207 / 5e-59 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10002392 [exp] 234 / 6e-72 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10024814 [exp] 143 / 6e-39 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10018721 [exp] 142 / 2e-38 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10006310 [exp] 120 / 5e-31 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10000379 [exp] 115 / 4e-30 AT5G67360 171 / 2e-47 Subtilase family protein (.1) Lus10002244 [exp] 114 / 9e-29 AT5G67360 567 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 233 / 1e-71 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 140 / 4e-38 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.003G118500 [exp] 115 / 5e-29 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.006G141200 [exp] 110 / 2e-27 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.019G006570 [exp] 109 / 4e-27 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.005G145300 [exp] 108 / 8e-27 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.001G113700 [exp] 105 / 1e-25 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 103 / 4e-25 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.007G045100 [exp] 101 / 2e-24 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.002G124500 [exp] 100 / 8e-24 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10027892 pacid=23156901 polypeptide=Lus10027892 locus=Lus10027892.g ID=Lus10027892.BGIv1.0 annot-version=v1.0 ATGGAATTCAAGAACGGTGACAACATCAGCGATGCCAAGGCCTACGCTGCTGCTGCTGCTGCAACTGATGTGCTTGCAGGGATGGACCAGGCAATCGAGG ATGGCGTGGACATCATGTCGCTGTCGTTGGGGTTCTTCGAGAATGCGTTTTACGACAACCCGATAGCAATGGGAGCATTTGCAGCTTTAAAGAAGGGTAT TTTAGTTGTATGTGGTGCTGGAAATGATGGCCCTCAAGGATACAGTACAGTCAATGGAGCTCCCTGGGTCACGGCTGTTGGCGCTGGGACCACCAGTCGT CATCTCGGAGCTCGAATCACTCTATTAGGAAGAGAGGATTCTCCGACATTGTTTGGAGATTCCTTGTATCCGGAGGATCTGTACACCAACAGAATCTCTC TGTATTTCGGCAGTGGGAATCGGAGCAAGGAAACTTGTGACATCATTGACCTCAATGATGCTACAGGCAAATTCGTCTTCTGTGACGATCCAGAAGCCTT TCGACTGAGCTACGAAAACAATAATAACGGACTTGGACCCAACGCCATGGCTTGCATTATCGTTAGCTCGGACAAAGGCGAGTTTCGCAACCAAGTTGGT AGCTTTGGTATGCCGTATGTTGTGGTGAGCACAAAAGATGGAGACTTGGTGAAAGATTACATACTCAACTCGACGAATTCGACAGTTAACAGTGTTAGGA AACAAGCCAGCTCCGAAAGTTGCATACTTTAG
AA sequence Show only first row Show all	>Lus10027892 pacid=23156901 polypeptide=Lus10027892 locus=Lus10027892.g ID=Lus10027892.BGIv1.0 annot-version=v1.0 MEFKNGDNISDAKAYAAAAAATDVLAGMDQAIEDGVDIMSLSLGFFENAFYDNPIAMGAFAALKKGILVVCGAGNDGPQGYSTVNGAPWVTAVGAGTTSR HLGARITLLGREDSPTLFGDSLYPEDLYTNRISLYFGSGNRSKETCDIIDLNDATGKFVFCDDPEAFRLSYENNNNGLGPNAMACIIVSSDKGEFRNQVG SFGMPYVVVSTKDGDLVKDYILNSTNSTVNSVRKQASSESCIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	0	1
					Lus10003941 [exp]	2.4	1.0000
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	2.8	1.0000
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	4.2	0.9632
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	4.9	1.0000
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	5.3	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025913 [exp]	5.5	0.7274
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	5.7	1.0000
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	6.3	1.0000
					Lus10001546 [exp]	6.8	0.7816
					Lus10017294 [exp]	6.9	1.0000

Compare expression of checked genes

Lus10027892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.