Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00900 138 / 3e-41 ATCG00900.1, RPS7.1 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) ATCG01240 138 / 3e-41 ATCG01240.1, RPS7.2 ribosomal protein S7 (.1) ATMG01270 43 / 3e-05 ATMG01270.1, RPS7 mitochondrial ribosomal protein S7 (.1) AT2G07696 43 / 3e-05 Ribosomal protein S7p/S5e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002394 [exp] 298 / 4e-103 ATCG00900 229 / 3e-77 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10000168 [exp] 60 / 4e-12 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10002395 [exp] 60 / 4e-12 ATCG00900 46 / 5e-08 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Lus10019847 [exp] 45 / 1e-05 AT2G15570 184 / 8e-60 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2) Lus10014069 [exp] 45 / 1e-05 AT2G15570 182 / 3e-59 THIOREDOXIN-M3, GFP ARRESTED TRAFFICKING 1, Arabidopsis thioredoxin M-type 3, Thioredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G140500 [exp] 147 / 3e-44 ATCG00900 249 / 2e-85 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.013G138900 [exp] 138 / 4e-41 ATCG00900 310 / 2e-110 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.011G075200 [exp] 70 / 4e-16 ATCG00900 81 / 7e-22 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.011G084201 [exp] 71 / 8e-16 ATCG00900 186 / 2e-62 CHLOROPLAST RIBOSOMAL PROTEIN S7, Ribosomal protein S7p/S5e family protein (.1) Potri.007G061841 [exp] 42 / 0.0001 ATMG01270 291 / 4e-103 mitochondrial ribosomal protein S7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00177 [flax] [poplar] Ribosomal_S7 Ribosomal protein S7p/S5e
Representative CDS sequence Show only first row Show all	>Lus10027894 pacid=23156997 polypeptide=Lus10027894 locus=Lus10027894.g ID=Lus10027894.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCAACCTCCACCTGCTTCCGTCCTCCACAAATCTCCGCCTCTCTCACTTTCCACCGCTCTCCAAACTTCACCTCCACCTCGGCACTCCCTT CCCCTTTCAACCTCTTCTCCGGCGGCGATAAAGCCCTAACCCTCCGTTTACCCAAATTCCCTTCGTTTTCCCCTCTCGAGATCGTCTGCCAGCGCGGGGG TAAAGGTAAAGGATTCAAAAATCCCTCATTAGGTCTTTTTGCCCCCAATTCGATTGATTTCCTTAATGGGTCGTTCTTCAATTGTGTTGTAAGGTGTGAA GAAAGACAAAACGGTGAAACCCGACCCGGTGTATCGCAACCGGCTGGTAACACTCTTCGTGAACCGAGTCCTGAAGAACGGGTTCAGGAGAAAACTGGGG AGAATCCATTGGAAGTGTTGAGGGACGCAGTGCAAGGTGTGACCCCTGACGTGGCAGTGAAGGCCAGGAGAGTTGGGGGTTCCACTCAGCAGGTCCCCGT CGAGGTGGACGCGGCCACAGGGAAAGCGCTCGCGATTCGTTGGCTGCTGATTGCCGCTCGAAAGAGGCAAGGTAGGGATATGGTGTTCAAGCTTAGCAAT GAGCTTATGGATGCTGCTAAGGGGAGTGGTGATGCTGTTAGGAAGAGGGAGGAGGTTCACAAGACCGCCGAGGCGAATCGGGCTTTCGCACATTATCGTT AG
AA sequence Show only first row Show all	>Lus10027894 pacid=23156997 polypeptide=Lus10027894 locus=Lus10027894.g ID=Lus10027894.BGIv1.0 annot-version=v1.0 MAASTSTCFRPPQISASLTFHRSPNFTSTSALPSPFNLFSGGDKALTLRLPKFPSFSPLEIVCQRGGKGKGFKNPSLGLFAPNSIDFLNGSFFNCVVRCE ERQNGETRPGVSQPAGNTLREPSPEERVQEKTGENPLEVLRDAVQGVTPDVAVKARRVGGSTQQVPVEVDAATGKALAIRWLLIAARKRQGRDMVFKLSN ELMDAAKGSGDAVRKREEVHKTAEANRAFAHYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	0	1
AT3G15190			chloroplast 30S ribosomal prot...		Lus10005538 [exp]	1.4	0.9768
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	1.7	0.9784
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10038770 [exp]	3.9	0.9766
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Lus10039092 [exp]	5.9	0.9690
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	5.9	0.9657
AT3G56910		PSRP5	plastid-specific 50S ribosomal...		Lus10037307 [exp]	6.0	0.9657
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	6.6	0.9729
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	10.4	0.9628
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10040693 [exp]	11.0	0.9568
AT1G64510			Translation elongation factor...		Lus10032419 [exp]	11.2	0.9563

Compare expression of checked genes

Lus10027894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.