Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05920 196 / 5e-55 Subtilase family protein (.1) AT5G67360 193 / 6e-54 ARA12 Subtilase family protein (.1) AT5G51750 182 / 3e-50 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 181 / 2e-49 Subtilase family protein (.1) AT4G34980 180 / 3e-49 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 180 / 3e-49 Subtilase family protein (.1) AT1G01900 177 / 2e-48 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G04110 172 / 1e-46 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G20160 167 / 1e-44 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT5G67090 158 / 8e-42 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002393 [exp] 536 / 0 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10002392 [exp] 453 / 3e-152 AT5G67360 530 / 3e-178 Subtilase family protein (.1) Lus10027891 [exp] 449 / 1e-150 AT5G67360 531 / 3e-178 Subtilase family protein (.1) Lus10000379 [exp] 325 / 4e-108 AT5G67360 171 / 2e-47 Subtilase family protein (.1) Lus10027892 [exp] 224 / 2e-70 AT1G04110 107 / 1e-26 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10024814 [exp] 219 / 8e-64 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10018721 [exp] 220 / 1e-63 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10042644 [exp] 210 / 2e-61 AT5G67090 413 / 5e-136 Subtilisin-like serine endopeptidase family protein (.1) Lus10001130 [exp] 205 / 3e-58 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 392 / 5e-129 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 252 / 1e-75 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 209 / 4e-60 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G124500 [exp] 209 / 1e-59 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G026700 [exp] 203 / 1e-57 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.007G045100 [exp] 197 / 1e-55 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.006G141200 [exp] 197 / 2e-55 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 192 / 2e-53 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.019G006570 [exp] 191 / 2e-53 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.012G131500 [exp] 191 / 3e-53 AT5G51750 1102 / 0.0 subtilase 1.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10027895 pacid=23156925 polypeptide=Lus10027895 locus=Lus10027895.g ID=Lus10027895.BGIv1.0 annot-version=v1.0 ATGGCTAGGCTCGCCATGTACAAGGTGATGTTCAAGAATGGTGACAACGTTAGCGATCCCAGGGAGTCTACTGCTGCTGCGACCGATGTGCTTGCAAGGA TGGACCAGGCGATCGAGGATGGCGTCGACATCATGTCGCTGTCGTTGGGGTTTTTCGAGAACGCGTTTTACGACAACCCGATAGCAATCGGAGCATTTTG CAGCTGTAAAGAAAGGTATCCTCGTTGTATGTGCTGCCGGAAATGCTGGCCGTCAAGGATACACTATCATCAACGGAGCTCCTTGGATCGTGACGGTTGG TGCGGGGACCATCAATCGCAATCTCAGAGCTCGAATCACTCTAGGAGGAGAGGAATATTCTCCAACATTGTTCGGAGATCCATGTATCCAGAGAATCTCT TCATAGACAGAGTCCCTCTGTATTTCGGTAGTGGGAATCGAAGCAAGGAGACTTTCGATATCATTGACCCCAATGATGCTGCAAGCAAGTTCGTCTTCTG CGACGATCCAGAAGCCTTTGGACCGAGCTACGAAAACAATAATAACGGACATGGACATAACGCCATGGCTGGCATTATCGTTAGCTCGGACAAAGGCGAG CTTCGCAAGCAAGTTGCTAGCTTTGGCTTTCCATATGTTGTGGTGAGCAGAAAAGATGGAGACTTGGTGAAGGGTTACATACTCAACTCGACGAATTCGA CAGTGACAGTGTTAGGAAACAAGCCAGCTCCGAAAGCTGCATACTTTAGTTCAAGGGGACCTTATGAGACGTCCCCTTGGATCCTGAAGCCTGATATTTT AGCTCCGGGGTATGATATTCTAGCTGCATGGGTTCCGAATCGGCCATTTACTCCAATTCGAGGAGGGGAGGATTACCTGCAGATGGACTATGCTATCTTA TCAGGTACATCAATGTCATGTCCACATATATCTGGAGTAGCTGCATTGCTGAGATCAGCACACAAGGACTGGAGCCTGGCTGCCATCCGGTCAGCGATGA TGACAACATGGTACGTTACAGACAATGTTGAAGGTACGATCGTGGATATGGCGACGGGAGCTGGAGGTGCTCTCGATTTTGGAGCAGGACTTGTGGACCC CAACAAGGCACTGGATCCGGGCTTGGTCTGCGACGTTGGAGTCAATGACTATGTGAACTACTTATGTGCAATGAACTATAGTAAAGTTGAGATAGGGGTC ATTACAGGGGAGGGCCCGAATTCGATCAGATGCGAATTCACGACCCTTGATCTGAACTACCCGTCATTCACGAAAGATACAAATTCGAGCAGCGTGGCAT TTTTTCCGAGTGGTGACGAATGTGGCCGATGGAGGTGGGAGTTCAGTTTATCGTGCTGTGGTGGAGACTCGAAGTGGGATCAAGGCTATTGTGGAGCCTT CTGTGAACAGGTTTGGAGGGAGGTATAG
AA sequence Show only first row Show all	>Lus10027895 pacid=23156925 polypeptide=Lus10027895 locus=Lus10027895.g ID=Lus10027895.BGIv1.0 annot-version=v1.0 MARLAMYKVMFKNGDNVSDPRESTAAATDVLARMDQAIEDGVDIMSLSLGFFENAFYDNPIAIGAFCSCKERYPRCMCCRKCWPSRIHYHQRSSLDRDGW CGDHQSQSQSSNHSRRRGIFSNIVRRSMYPENLFIDRVPLYFGSGNRSKETFDIIDPNDAASKFVFCDDPEAFGPSYENNNNGHGHNAMAGIIVSSDKGE LRKQVASFGFPYVVVSRKDGDLVKGYILNSTNSTVTVLGNKPAPKAAYFSSRGPYETSPWILKPDILAPGYDILAAWVPNRPFTPIRGGEDYLQMDYAIL SGTSMSCPHISGVAALLRSAHKDWSLAAIRSAMMTTWYVTDNVEGTIVDMATGAGGALDFGAGLVDPNKALDPGLVCDVGVNDYVNYLCAMNYSKVEIGV ITGEGPNSIRCEFTTLDLNYPSFTKDTNSSSVAFFPSGDECGRWRWEFSLSCCGGDSKWDQGYCGAFCEQVWREV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10027895 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	3.3	0.9083
					Lus10027893 [exp]	4.2	0.8977
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	5.5	0.8717
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	9.2	0.8284
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10009408 [exp]	12.7	0.7697
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	17.4	0.8411
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039577 [exp]	22.6	0.8217
					Lus10009927 [exp]	22.6	0.8358
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032621 [exp]	22.8	0.8355
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	25.8	0.8258

Compare expression of checked genes

Lus10027895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.