Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67090 56 / 8e-10 Subtilisin-like serine endopeptidase family protein (.1) AT5G67360 56 / 9e-10 ARA12 Subtilase family protein (.1) AT1G01900 48 / 4e-07 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT1G30600 44 / 7e-06 Subtilase family protein (.1) AT4G34980 44 / 1e-05 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 44 / 2e-05 Subtilase family protein (.1) AT5G51750 43 / 2e-05 ATSBT1.3 subtilase 1.3 (.1) AT2G19170 42 / 4e-05 SLP3 subtilisin-like serine protease 3 (.1) AT5G59120 42 / 4e-05 ATSBT4.13 subtilase 4.13 (.1) AT4G10550 41 / 8e-05 Subtilase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002393 [exp] 118 / 1e-31 AT5G67360 450 / 9e-148 Subtilase family protein (.1) Lus10002044 [exp] 99 / 1e-27 AT5G67090 74 / 2e-16 Subtilisin-like serine endopeptidase family protein (.1) Lus10002398 [exp] 95 / 4e-25 AT5G67360 66 / 3e-20 Subtilase family protein (.1) Lus10013154 [exp] 61 / 1e-11 AT3G14067 915 / 0.0 Subtilase family protein (.1) Lus10009365 [exp] 59 / 6e-11 AT5G67090 637 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10018721 [exp] 58 / 2e-10 AT5G67360 531 / 7e-179 Subtilase family protein (.1) Lus10024814 [exp] 56 / 1e-09 AT3G14240 504 / 3e-169 Subtilase family protein (.1) Lus10001130 [exp] 54 / 3e-09 AT5G67090 581 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10007036 [exp] 54 / 4e-09 AT5G67360 564 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G100500 [exp] 99 / 4e-25 AT4G34980 541 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 66 / 2e-13 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.003G067000 [exp] 57 / 3e-10 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 56 / 5e-10 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.005G145300 [exp] 55 / 1e-09 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 55 / 2e-09 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 54 / 3e-09 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.007G045100 [exp] 54 / 4e-09 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G118800 [exp] 54 / 4e-09 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G455800 [exp] 54 / 5e-09 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Lus10027896 pacid=23157084 polypeptide=Lus10027896 locus=Lus10027896.g ID=Lus10027896.BGIv1.0 annot-version=v1.0 ATGGTTTCCTCTAAGCTTCACACTGTCTTCCTTCTCCTCTCATTAGCCTGTCTTCCTTCTCGTCTCATTAGCCACATCGCTCTCCACGTCATCCGACCGT GGGACCTACATCGTCCACATGGACAAATCAGCCATCCCAAACCCCTTCGCGACTCCATGCATTGGTACACGTTGATTCTCTCGCCCATGTCATCAGAACC TCTCCATCTCTACACCTACAAGCATGTAATCAACGGATTCAGCGCTGTCCTCACACAAGCTCTGCTCGATCAAGTAGAGCAGATCCCCGGCCACGTGGCG ACCTTCCCCGAATCCTACAGCCATCGTCACACGACCTATACTCCGAAATTCCTCGGCCTGAACAAACTTGCCTATGGCCAGCTGGCAAGTTTGGTGGCGA TGACGTAA
AA sequence Show only first row Show all	>Lus10027896 pacid=23157084 polypeptide=Lus10027896 locus=Lus10027896.g ID=Lus10027896.BGIv1.0 annot-version=v1.0 MVSSKLHTVFLLLSLACLPSRLISHIALHVIRPWDLHRPHGQISHPKPLRDSMHWYTLILSPMSSEPLHLYTYKHVINGFSAVLTQALLDQVEQIPGHVA TFPESYSHRHTTYTPKFLGLNKLAYGQLASLVAMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027896 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	1.0	0.9990
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	5.3	0.8238
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	6.5	0.8238
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	7.5	0.8238
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	8.4	0.8158
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	9.2	0.8131
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10018441 [exp]	9.4	0.7677
					Lus10011218 [exp]	9.9	0.8095
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	11.8	0.7658
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	12.4	0.7673

Compare expression of checked genes

Lus10027896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.