Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49720 245 / 3e-77 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 240 / 8e-75 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G45249 211 / 1e-63 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT4G34000 159 / 8e-44 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT3G56850 115 / 4e-29 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 92 / 9e-21 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT5G42910 91 / 9e-20 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G44460 86 / 3e-18 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G36270 61 / 8e-10 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G03970 52 / 3e-07 bZIP GBF4 G-box binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014066 [exp] 387 / 6e-132 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10002399 [exp] 300 / 4e-98 AT3G19290 203 / 2e-61 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10006489 [exp] 240 / 4e-75 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10009755 [exp] 236 / 1e-72 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10019850 [exp] 145 / 6e-40 AT4G34000 189 / 2e-57 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10008928 [exp] 104 / 3e-26 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 105 / 3e-25 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10021369 [exp] 104 / 1e-24 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008929 [exp] 100 / 1e-23 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G101200 [exp] 330 / 1e-109 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.004G140600 [exp] 318 / 6e-105 AT4G34000 321 / 8e-106 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.014G028200 [exp] 254 / 2e-80 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.002G125400 [exp] 201 / 2e-59 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.008G010800 [exp] 108 / 4e-26 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 107 / 5e-26 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 107 / 8e-26 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.006G083000 [exp] 100 / 5e-23 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.016G024000 [exp] 94 / 2e-21 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.009G018500 [exp] 91 / 1e-20 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10027897 pacid=23156950 polypeptide=Lus10027897 locus=Lus10027897.g ID=Lus10027897.BGIv1.0 annot-version=v1.0 ATGGGGTCACATTTCAACTTCAGCAGCTTTGGCAACCCAGCGAATTCGCCATTGGTTCGTCAGCAGTCCTCTGTATACTCTTTGACATTCGACGAGCTCC AGAACACCTGGGGTGGAAGCATAGGGGGGAAGGATTTCGGGTCGATGAACATGGATGAGCTGCTGAAGAACATATGCACTGCTGAAGAAACAAGTACAAT AGGTGTGGTTGAAGAAGCTGGTACAGGGAACCTTCAGAGACAAGGCTCTTTAACTCTGCCAAGGACTTTGAGTCAGAAGACTGTTGATGAGGTCTGGAAA GACTTCATCAAGGAGAACAGCGTCGCTGCTGCTGCGAAGGATGTGACTCAACCGCCTGATGATCCGATGCTGATGCCTCAAAGGCAAAGGACTTTAGGTG AGATGACATTGGAGGAGTTCTTGCTTAGGGCAGGAGTTGTGAGAGAGGAAAACAATAACAATAACAACAAGCAGCAGTTCGGGAGGCCGAGTAATGTTGG ATTCTTTGGCGAGTCAGCTCAGCTGAACGGCGGTGACCATAGCGGGTTGGCTCTCGGGTTCCAACCTTCAAATCGCGAGAATATAATCAACAATAATAGC TTCCTTGCGAATCAAGGTTCGAACTTGGGACTGAATGTTGGTGGAATAAGACCTCCTCCACATCAGCAGCTCCATCAACAGTCGACATTGCATCGATCTC GAAATCAGCCACGCCATCAGCAGCAACAACAGCCACTCTTGTTTCCTAAACCAGCTCATGTTCCATTTGCATCTCCAGTGCACAACAAGATAAATGGCGG TCGAAGCTCTGCAGCAGGTGTTACAGTTGCAACAGCATCTCCTGCAAGCCAGAAATCGCCCGATGTGCTGTCAAGGAGCGATGCTGACACGTTGTCAGTT TCCCCGGTGCCTTATGTGTTCAGCAGCCGAGGTAGGAGGCCTAATACAGCTCTTGAGAAGGTTGTTGAGAGAAGGCAGAGAAGAATGATCAAGAATCGGG AGTCTGCAGCGCGATCTCGTGCTCGCAAGCAGGCATATACACTAGAGCTCGAAGCTGAGGTTGCGAAACTTAAGGAGCTGAATGAAGAACTGGAAAGAAA ACAGGCTGAAATTATGCAAATGCAGCAAAATCAGGGCGTACATTTGGATGCTAGAATAGTCTATAGGTCTGAATTCCACTGTGATTTTGCAGTGCTTGGA GAAAATGAAGCATCAATGGGGAGGCAAGCGGCTTTGCTTGAGGAGGACACTGACAGGGCCATGGTAGAGAGTCAGGATCAATTAGATATTGTTTCGAAGC ATCGTGTATGA
AA sequence Show only first row Show all	>Lus10027897 pacid=23156950 polypeptide=Lus10027897 locus=Lus10027897.g ID=Lus10027897.BGIv1.0 annot-version=v1.0 MGSHFNFSSFGNPANSPLVRQQSSVYSLTFDELQNTWGGSIGGKDFGSMNMDELLKNICTAEETSTIGVVEEAGTGNLQRQGSLTLPRTLSQKTVDEVWK DFIKENSVAAAAKDVTQPPDDPMLMPQRQRTLGEMTLEEFLLRAGVVREENNNNNNKQQFGRPSNVGFFGESAQLNGGDHSGLALGFQPSNRENIINNNS FLANQGSNLGLNVGGIRPPPHQQLHQQSTLHRSRNQPRHQQQQQPLLFPKPAHVPFASPVHNKINGGRSSAAGVTVATASPASQKSPDVLSRSDADTLSV SPVPYVFSSRGRRPNTALEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKELNEELERKQAEIMQMQQNQGVHLDARIVYRSEFHCDFAVLG ENEASMGRQAALLEEDTDRAMVESQDQLDIVSKHRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10027897 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10002454 [exp]	6.5	0.7878
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	9.4	0.7675
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	11.2	0.7641
AT1G30290			Tetratricopeptide repeat (TPR)...		Lus10010585 [exp]	12.5	0.7454
AT3G20650			mRNA capping enzyme family pro...		Lus10039035 [exp]	17.9	0.7351
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	18.0	0.7619
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	18.8	0.7532
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	23.1	0.7426
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	23.7	0.7186
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	25.3	0.7403

Compare expression of checked genes

Lus10027897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.