Plant FIBer expression Database

Lus10027899 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19280 580 / 0 FUCTA, FUCT1, ATFUT11, FUT11 fucosyltransferase 11 (.1)
AT1G49710 573 / 0 ATFUT12, FUCTB, FUCT2, FUT12 fucosyltransferase 12 (.1)
AT1G71990 72 / 2e-13 ATFT4, ATFUT13, FUCTC, FT4-M, FUT13 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002401
[exp]
912 / 0 AT1G49710 607 / 0.0 fucosyltransferase 12 (.1)
Lus10019855
[exp]
716 / 0 AT1G49710 650 / 0.0 fucosyltransferase 12 (.1)
Lus10014060
[exp]
712 / 0 AT1G49710 642 / 0.0 fucosyltransferase 12 (.1)
Lus10009440
[exp]
75 / 3e-14 AT1G71990 603 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Lus10006076
[exp]
73 / 2e-13 AT1G71990 607 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G101500
[exp]
647 / 0 AT3G19280 701 / 0.0 fucosyltransferase 11 (.1)
Potri.019G091200
[exp]
88 / 3e-21 AT3G19280 92 / 2e-23 fucosyltransferase 11 (.1)
Potri.019G082200
[exp]
74 / 4e-14 AT1G71990 587 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
Potri.013G111200
[exp]
71 / 6e-13 AT1G71990 576 / 0.0 ARABIDOPSIS FUCOSYLTRANSFERASE 4, fucosyltransferase 13 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0113 GT-B PF00852 Glyco_transf_10 Glycosyltransferase family 10 (fucosyltransferase) C-term
Representative CDS sequence
>Lus10027899 pacid=23156902 polypeptide=Lus10027899 locus=Lus10027899.g ID=Lus10027899.BGIv1.0 annot-version=v1.0
ATGGGTGGTCTGTCAAATATAAGGAGTCCCAGGAATCCAGAAGATGGGTCGTTGATATCGTCACCGCCGGCGGGGGGGGCTCCCCCCGCCGGCGGTGGTC
GTCTCGAGACGGCTAAGAATGCTGCTGCCACGGTCGACTCGTGGGCGGGTAGCTTCCGTAACCGGTCCGGTTCGAAGCGTTTGGCGCCGGTGTTGGTTGG
TAGAAACGATGTCGTGTCGAGGTCAGAAAGTTGCGAGGAGTGGTTGGAGCGGGAAGATGCTGTGGATTATTCACGGGATTTCAATGAAGTTCCCATCTTC
ATCGCCCCTGCTATGGAGGACTCGAAGACTTGTCCTGTGGGGTGTAAATTCGGACACGACTCGAGCAAAACCACCCCTGATGCAATAATCGGCACACCGA
ATGATCTGTCTGGAGCTATCAGTGTTCACCGGTCAATGGAATCAGCTCAATATTATTCAGAGAACGACGTTTCAAGGGCACGACGAAGGGGATTCCATGT
AGTAATGACTACAAGCCTATCCTCTGATGTCCCAGTTGGATATTTTTCCTGGGCAGAATATGATATCATGGCACCTATGGAGCGAAAAACCGAAAAAGCC
CTTGCAGCTGCCTTCATCTCGAACTGTGGTGCCCGCAACTTCCGTCTCCAAGTACTCGACGCCCTTGAAAATTGGAAGGTTCCTATCGACTCTTACGGTG
CTTGCCACCGGAACCGCGATGGAAGAGTGGATAAAGTTGAGGCCTTGAAGCGCTACAAGTTTAGCTTGGCTTTCGAGAACTCGAACGAGGAGGATTACGT
TACCGAGAAGTTCTTCCAGTCTCTTGTTGCTGGGACCATTCCAGTCGTCGTTGGTGCTCCAAACATTCAAGATTTCGCACCCGGTCCAGGTTCAGTACTA
CACATCAAGACCCTCAAAGATGTCGGGACGGTTGCAAAAACAATGAGAGATCTATCTCATAACCATATTGCATACAACCAGTCACTAAGGTGGAAATTCG
ACGGCCCTTCTGATTCTTTCAAGGCTCTGGTGGATATGGCGGCAGTACATTCATCGTGCCGCCTCTGCATTCACATAGCTACTATGATCCGCGAGAAGGA
AGAGATTAGTAGCCCCCGGTTCAAGAAACGTGCATGCACGTGCACCAGAGGTTCCGAGACTGTGCACCATTTGTTCGTAAGAGAACGAGGGAGCTTCAAA
TTGGAGTCCATATACTTGAGGTCGGGGAACTTGACCGTGGATGCACTAGAGGACCGAGTTCTGGAGAAGTTCAAGTCCATTAAACATGTACCTAACTGGA
AACGTGAGAGACCGGAGAGCATAAGGGGTGAAGACGGCGATTACGGAGTGTATAGAGTTTACCCGGTTGGGTTGACGCAGAGGCAAGCGCTGTACTCGTT
TCGGTTTACGAGTTTTGAGTTGCAGAATCACCTAGAAGCAAACCCTTGTCCAAAGTTTGAGGTGGTTTTTGTGTAG
AA sequence
>Lus10027899 pacid=23156902 polypeptide=Lus10027899 locus=Lus10027899.g ID=Lus10027899.BGIv1.0 annot-version=v1.0
MGGLSNIRSPRNPEDGSLISSPPAGGAPPAGGGRLETAKNAAATVDSWAGSFRNRSGSKRLAPVLVGRNDVVSRSESCEEWLEREDAVDYSRDFNEVPIF
IAPAMEDSKTCPVGCKFGHDSSKTTPDAIIGTPNDLSGAISVHRSMESAQYYSENDVSRARRRGFHVVMTTSLSSDVPVGYFSWAEYDIMAPMERKTEKA
LAAAFISNCGARNFRLQVLDALENWKVPIDSYGACHRNRDGRVDKVEALKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIQDFAPGPGSVL
HIKTLKDVGTVAKTMRDLSHNHIAYNQSLRWKFDGPSDSFKALVDMAAVHSSCRLCIHIATMIREKEEISSPRFKKRACTCTRGSETVHHLFVRERGSFK
LESIYLRSGNLTVDALEDRVLEKFKSIKHVPNWKRERPESIRGEDGDYGVYRVYPVGLTQRQALYSFRFTSFELQNHLEANPCPKFEVVFV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G19280 FUCTA, FUCT1, A... fucosyltransferase 11 (.1) Lus10027899
[exp]
0 1
AT1G68150 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1... Lus10035971
[exp]
12.6 0.9126
AT4G00080 UNE11 unfertilized embryo sac 11, Pl... Lus10030292
[exp]
16.2 0.9064
AT2G43870 Pectin lyase-like superfamily ... Lus10002124
[exp]
18.3 0.9028
AT3G18200 nodulin MtN21 /EamA-like trans... Lus10038959
[exp]
25.9 0.9023
AT1G53760 unknown protein Lus10037462
[exp]
26.5 0.8902
AT4G36810 GGPS1 geranylgeranyl pyrophosphate s... Lus10028507
[exp]
29.0 0.8670
AT4G14750 IQD19 IQ-domain 19 (.1) Lus10021904
[exp]
31.1 0.9019
AT2G45570 CYP76C2 "cytochrome P450, family 76, s... Lus10027426
[exp]
33.3 0.9015
AT2G45290 Transketolase (.1) Lus10004750
[exp]
34.3 0.8988
AT1G53130 GRI GRIM REAPER, Stigma-specific S... Lus10005544
[exp]
42.7 0.8973

Lus10027899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.