Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15460 511 / 0 Ribosomal RNA processing Brix domain protein (.1) AT1G52930 503 / 0 Ribosomal RNA processing Brix domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002403 [exp] 619 / 0 AT3G15460 519 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Lus10019857 [exp] 476 / 1e-170 AT3G15460 444 / 4e-158 Ribosomal RNA processing Brix domain protein (.1) Lus10014058 [exp] 475 / 4e-170 AT3G15460 442 / 3e-157 Ribosomal RNA processing Brix domain protein (.1) Lus10035745 [exp] 45 / 5e-05 AT1G63780 468 / 2e-168 Ribosomal RNA processing Brix domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122200 [exp] 531 / 0 AT3G15460 517 / 0.0 Ribosomal RNA processing Brix domain protein (.1) Potri.001G403100 [exp] 530 / 0 AT3G15460 514 / 0.0 Ribosomal RNA processing Brix domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF04427 [flax] [poplar] Brix Brix domain
Representative CDS sequence Show only first row Show all	>Lus10027900 pacid=23156966 polypeptide=Lus10027900 locus=Lus10027900.g ID=Lus10027900.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAACGGAAGCATAGCGAGACGGCGGCAGCTCCTCAGAAGAAGGAAGAGGTTGCACCGGAGCGGCCTAAGAGAACGCTTTTCGGATTTAAAG ACAAGGATGCTGCTACTGCTGCTGTTGAAGCTGAAGATAACGATGGAGTTCAGCCGTCTACTCTGGGGTTCAGGAACAAAGAAAAAGTCCTGGTCACTTG CTCTCGCCGTATCAGTTTCAGGTATAGGCACTTGATGTTGAACATGGTGTCCTTATTGCCTCACTGTAAGAAGGATAATAAGGTTGAATCGAAAAGCAGT AAAGGGGTTGCTCTCAGTGAGATGGTTGAGCTCAAGAGTTGCTCTTCCATTTTGTTCTTTGAGTGCAGGAAGCACAAGGACTTGTACTTGTGGATGGCAA AGTGCCCTAGTGGACCGTCTGTGAAATTCCTAGTTAATGCTGTGCACACCATGGAAGAGTTGAAACTTACTGGGAACCATCTAAAAGGATCGCGCCCGCT CTTAACATTCTCGTCCAATTTTGACAAAGACGCCCACTGGAAGCTCGTCAAGGAAATGATTACACAGATATTTGGGGTTCCGAAAGAGCACCGGAAATCT AAGCCGTATCATGATCATGTCTTCGTTTTCTCCATCGTCGATGGCCATATCTGGTTCCGCAATTACCAGATATCAGCTCCTCACAACGAATCCGATAAAG TAGTCCGCGGAGGACTCGACAAGATGACCCTTGTAGAGGTCGGTCCAAGGTTCTGTTTGAACCCTATCAAGATATTCAGTGGCAGCTTTGGCGGCCCAAC GCTCTACGAGAATCCACTCTACATTTCTCCTAATCTGATACGCGCGATGGAGAAGAGGAAGACTGCTGGGAAGTACGCGAAGAAGGTGAAAGCTAAGACT AGGAGGAAGGAGCATGAGTTAACCAATCAGTTGGAGGCGGATGAGTTTTCCGAGATGTGGAAAGAGTAG
AA sequence Show only first row Show all	>Lus10027900 pacid=23156966 polypeptide=Lus10027900 locus=Lus10027900.g ID=Lus10027900.BGIv1.0 annot-version=v1.0 MAKKRKHSETAAAPQKKEEVAPERPKRTLFGFKDKDAATAAVEAEDNDGVQPSTLGFRNKEKVLVTCSRRISFRYRHLMLNMVSLLPHCKKDNKVESKSS KGVALSEMVELKSCSSILFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDAHWKLVKEMITQIFGVPKEHRKS KPYHDHVFVFSIVDGHIWFRNYQISAPHNESDKVVRGGLDKMTLVEVGPRFCLNPIKIFSGSFGGPTLYENPLYISPNLIRAMEKRKTAGKYAKKVKAKT RRKEHELTNQLEADEFSEMWKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	0	1
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	4.0	0.9344
AT1G69070			unknown protein		Lus10019174 [exp]	4.7	0.9455
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	4.9	0.9271
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	6.0	0.9186
AT5G26830			Threonyl-tRNA synthetase (.1)		Lus10021402 [exp]	7.7	0.9306
AT5G48240			unknown protein		Lus10041095 [exp]	11.2	0.9117
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10017896 [exp]	12.0	0.9167
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	13.9	0.9227
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10042031 [exp]	15.8	0.9263
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	16.9	0.8839

Compare expression of checked genes

Lus10027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.