Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 63 / 2e-12 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 49 / 8e-08 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002404 [exp] 286 / 3e-99 AT5G27990 77 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10005806 [exp] 120 / 9e-34 AT5G27990 107 / 4e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006795 [exp] 117 / 6e-33 AT5G27990 107 / 2e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 63 / 2e-11 AT3G22520 340 / 4e-106 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047901 [exp] 112 / 7e-31 AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.013G035000 [exp] 109 / 1e-29 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 79 / 6e-19 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [flax] [poplar] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Lus10027901 pacid=23157041 polypeptide=Lus10027901 locus=Lus10027901.g ID=Lus10027901.BGIv1.0 annot-version=v1.0 ATGGTCGGCGGAGGAGACTCCCCAAACGGGGCAGAAATTAAGCTGAAGGAAGGAATACATTTGATTCTCTCCAGATGGTCAGTTCTCGTGGACGCCGTCG ACCAAGAAATGGCCGGGCGTGACTCCTGGAAATTGGCCGATCAACTCGCTTCCGACATCTACACCTGGTTCATCCAAAAACGCAAAGCCGGTGAGCTTTA TATTGATGATCTGGAACAAGTTCTCGAAAAAGGAATGGAGAATCTTTCCGTCTATTTTGACGATGCCAGCTATGAAGACATTGAGGAGGTAGCAGAGGCT CTGATGATAATGCACGAGGAATGGTTGGCAGGTGATTATAGCTATGTCGACAAGTTGAAAGCTGCTCCGAAGCCTAATGCTACCGAAACTCGTCAACGTA TTGTACAGGCTGATGGTGATGAAGATGACTCTTCCAGTTCCAGTGGTGATGATGATGGTGGTGATGAGGATATGATGATTCCTGGAGGTAGTGAATCAGA TATGGCGGTGGATTCAGTGGCCACGATGACTCCTACGCCGGCTCCTCCTCAGATGGATGATGATGGTTGGACCGTCGTCTCCTCCTCCTCCCGTCGAAAC AGAGGTAGAAGGAACTGA
AA sequence Show only first row Show all	>Lus10027901 pacid=23157041 polypeptide=Lus10027901 locus=Lus10027901.g ID=Lus10027901.BGIv1.0 annot-version=v1.0 MVGGGDSPNGAEIKLKEGIHLILSRWSVLVDAVDQEMAGRDSWKLADQLASDIYTWFIQKRKAGELYIDDLEQVLEKGMENLSVYFDDASYEDIEEVAEA LMIMHEEWLAGDYSYVDKLKAAPKPNATETRQRIVQADGDEDDSSSSSGDDDGGDEDMMIPGGSESDMAVDSVATMTPTPAPPQMDDDGWTVVSSSSRRN RGRRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27990			Pre-rRNA-processing protein TS...		Lus10027901 [exp]	0	1
AT3G18310			unknown protein		Lus10027301 [exp]	8.8	0.6738
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	14.4	0.7166
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	17.7	0.6818
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	22.3	0.6842
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	22.3	0.6796
AT1G52140			unknown protein		Lus10037566 [exp]	22.4	0.6765
AT1G31240			Bromodomain transcription fact...		Lus10040612 [exp]	26.7	0.6177
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	34.3	0.6726
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	34.6	0.6757
AT1G11120			unknown protein		Lus10018462 [exp]	38.8	0.6377

Compare expression of checked genes

Lus10027901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.