Plant FIBer expression Database

Lus10027902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032852
[exp]
108 / 2e-28 AT3G09510 62 / 2e-10 Ribonuclease H-like superfamily protein (.1)
Lus10025268
[exp]
65 / 4e-13 ND /
Lus10015596
[exp]
59 / 6e-11 ND 41 / 2e-04
Lus10030004
[exp]
59 / 6e-11 ND /
Lus10034050
[exp]
59 / 1e-10 ND /
Lus10037174
[exp]
50 / 3e-08 ND /
Lus10012727
[exp]
52 / 7e-08 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1)
Lus10043331
[exp]
49 / 6e-07 ND /
Lus10015878
[exp]
47 / 2e-06 AT3G25270 42 / 2e-04 Ribonuclease H-like superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF00075 RNase_H RNase H
Representative CDS sequence
>Lus10027902 pacid=23156872 polypeptide=Lus10027902 locus=Lus10027902.g ID=Lus10027902.BGIv1.0 annot-version=v1.0
ATGAGGACCACTAGACGGTCATTGATTAGACCGGTTTCTGCGATCACTGGGGTCCGGTTTGGTGTTGATCGCCGTGCAGAGCCAGTTAGGGTTGAGATGA
CGGCATGTGATGGTGCCGATGCTGCTGAGCCTACTGAGGATGCAAGAACATCTTGTAGTGCAACCGAGAGATCTCTTTTTGTTGGAACATCTGGAAGGCC
AGAACGAGATGACAGACCGATCCCCTGTTGCACTATAGCCGCTGGGGAAAGAGATCTGGACGAGTGGTCCAACATGGGTGCTCGACAAGCCCTTTATACC
AGCCTTCCCCCTGTTTCTCACCCCGCTCCTCAGTCTTGTCCACAACCTCGTACTCATGCCTTTGAGATACAATCTGATGGATCGTTTATCAACGATTCAC
AGACAGCGGCTTATGGCATTGTCATGACTAATGTCCATGGTCAAATCTATGGTGGGTCCAGCGATCTTATCGCTTGCTCCTCTCCGGTAGTAGCTGAGGC
ATGTGCTCTCCTCGAAGCCATCATCCTGGCTCACTCGACGGCTCGCCACACACTTATTTTCTCCGACTGTCAATCCCTGGTCAATATGCTCAACAATGAC
GACCGCCCATGGCCGTGA
AA sequence
>Lus10027902 pacid=23156872 polypeptide=Lus10027902 locus=Lus10027902.g ID=Lus10027902.BGIv1.0 annot-version=v1.0
MRTTRRSLIRPVSAITGVRFGVDRRAEPVRVEMTACDGADAAEPTEDARTSCSATERSLFVGTSGRPERDDRPIPCCTIAAGERDLDEWSNMGARQALYT
SLPPVSHPAPQSCPQPRTHAFEIQSDGSFINDSQTAAYGIVMTNVHGQIYGGSSDLIACSSPVVAEACALLEAIILAHSTARHTLIFSDCQSLVNMLNND
DRPWP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10027902
[exp]
0 1
AT2G27250 AtCLV3, CLV3 CLAVATA3 (.1.2.3) Lus10013340
[exp]
8.1 0.9948
AT3G28470 MYB TDF1, ATMYB35 DEFECTIVE IN MERISTEM DEVELOPM... Lus10039462
[exp]
9.9 0.9498
Lus10015895
[exp]
11.2 0.9915
AT2G21650 MYB RSM1, ATRL2, ME... RADIALIS-LIKE SANT/MYB 1, MATE... Lus10040453
[exp]
11.7 0.9918
Lus10033923
[exp]
12.4 0.9094
Lus10001854
[exp]
14.5 0.9917
Lus10037567
[exp]
15.7 0.9730
AT5G64820 unknown protein Lus10025572
[exp]
16.7 0.9917
AT3G56960 PIP5K4 phosphatidyl inositol monophos... Lus10027306
[exp]
17.0 0.9220
Lus10042586
[exp]
17.1 0.9194

Lus10027902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.