Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71240 808 / 0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) AT4G33650 434 / 2e-136 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 405 / 5e-126 DRP3B dynamin related protein (.1.2.3) AT1G48840 223 / 3e-61 Plant protein of unknown function (DUF639) (.1) AT3G18350 209 / 2e-56 Plant protein of unknown function (DUF639) (.1) AT5G23390 194 / 3e-51 Plant protein of unknown function (DUF639) (.1) AT2G21720 122 / 3e-28 Plant protein of unknown function (DUF639) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002408 [exp] 1345 / 0 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10002407 [exp] 602 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10014041 [exp] 549 / 2e-180 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 473 / 3e-151 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 466 / 5e-148 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 461 / 3e-146 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10013865 [exp] 214 / 4e-58 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 190 / 7e-50 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 186 / 1e-48 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210200 [exp] 940 / 0 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Potri.007G118300 [exp] 475 / 2e-151 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 467 / 1e-148 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.015G046500 [exp] 212 / 2e-57 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G055800 [exp] 211 / 4e-57 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.008G003000 [exp] 179 / 2e-46 AT5G23390 730 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 149 / 8e-37 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.012G125300 [exp] 44 / 0.0006 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0484 [flax] [poplar] Peroxisome PF04842 [flax] [poplar] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Lus10027905 pacid=23156904 polypeptide=Lus10027905 locus=Lus10027905.g ID=Lus10027905.BGIv1.0 annot-version=v1.0 ATGCTTTCCAAGTCGACTCCTTCTTGCTTCAACAATCCTTCAATGACAGCAGGAGTAGTACCCAGTTCTTTTATTTTGCATCCCTGTGAGTTTTGCAGGT GGCCAAGGCAGGGTAACGGCCACCGGTTGAGGTTTAAGGTCGTGGGTCAGTCTCCTGGGAACGGATGGAAGCTCAACGACCTTGATACCAAGGCAGTGCA GGAACGGTTGAGTTCATGGATGTCTAAGACCCAAAATTTTGTTAAACAAGTCGCTTCGCCCCTGGTAAAGTCTGGTTACACTGGAAAAATCACTTCTGAA AAAGCTGTTGATGCCTTAGAGCTGGAGGACGTGTTTCTGGTTGAGCCGACTATTAAAAGAAATACATCGAAGGGAGTTCTTTCAATGGCTGCTTTGATTT TTAAAGCTCTTGTTGCAGAGCCTGTTTATAGTGATGCTCGTAATTTGGTGGAGTATTGCTGCTTTAGGTTATTGTCCAGGGATAGCTCATCCTTTCATCC AAGTCTCAAGGAAGCAGCGTTTCAGCGGTTAATATTCATCACAATGCTTGCATGGGGAAATCCTTACTGCAAGGGAAATACGTCCCAGGAAGGTTCTTTA AAGGGACAGCTTGTTGGAAAAGAGGCTTTTGTACGTATTGCTCCGGCTATTCCTGGTGTAGCTGATCATTCCACAGTGCATAACCTTTTCAAAGCCCTAG CTGGGGACGAAAGAGGCATCTCAGTGAAAGTGTGGTTAACTTATATCGATGAACTTCTCAAAGTGCATGAAGGAAGAAAGTCATACCAGACCCGCGAATA TCCTCAGCTGCAGAATGAAAAAGTCCTGTGCATTGGTTCTAGCAAGAAGCAGCCTGTCCTGAAATGGGAAAATGGTATTGGATGGCCTGGGAAAGTCATT TTGACCGAGAAAGCACTGTATTTTGAGGCTGTCGAGTTGTTCGGGAAAAAAAGCTCGATAAGGCTTGACCTTACTAGAAACGGATTACAAGTACAGAAAA CAAAAGTTGGACCTCTGGGTTCTGTACTTTTTGACTCTGCAGTCTCTGTTGAATCAACTTCTGGATCAGACAAATTAGTGCTAGAGTTTGTTGATTTGGG AGGTGAACTGAGGCGCGATGCTTGGCATGCATTTATCTCTGAAGTAGTTTCTTTGCATAAGTTTTTAAATGAGTATGGGCCAGATGATGGCGATCCCTCA TTATCACAAGTATACGGTGCCGAAAAAGGCAAACAACGGGCCATCGACAGTGCAATCAACAGCATAGCCAGACTTCAGGCACTTCAATTTATGAGGAAAT TGGTGGATGATCCTGTCAAACTAGGTCAGTTCTCATACCTTCGAAACGCACCATATGGAGAGATTGTGTACCAAACTCTGGCTCTAAATTATTGGGGTGG GCCTCTGGCTAAGTCTTTTAAAGAGGATGACTATCAACCGACTCCGAGAGCATTGTCTACTGATGGTGTATCGAAAATCAAGATTCATTTGCCCGACATA GATGGAAGCATCTACCTGCGGCAGTGGATGAGGTCTCCATCTTGGGTCTCCAGTGCTTCCACTAGTTTCTGGAAGAACTCATCGACCGGGAAAGGTGTAG TTCTGAGTAAAGATGTAGTAGTTGCTGATCTCAATCTGGTAGAGAAGGCAGCATCAGCATGTAGAGAGAAAAGTGAAGTGGCGGAAAAAACTCAAGAAAC AATTGATGCTGCAATGCTGAAAGGGATACCAAGTAACATTGACCTTTTAAAGGAATTGATACTTCCCCTATCCATGACCGCCAAGAATTTTGAAAAGTTG AAACGTTGGGAAGAACCACATCTAACAATCTCTTTTCTTGCATTTTCCTATGCTATAATTTTCAGAAATCTGCTTTCACATGTACTTCCAATGATGATGA TGGTTTTGGCAGCCGGAATGCTGACATTAAAGGGGCTCAAGCAGCAAGGTCGCTTGGGAAGATCATTTGGAAAAGTAGTTATTCAGGACCAACCCCCTTC AAATACCATTGAAAAGATTATAGCTGTGAAAGATGCCATGCAAGACGTCGAAAATTACCTCCAGAATCTTAACGTCACCTTGTTGAAAATACGGAATATC TTTCTTTCCGGTCAACCACAGGTATACAATTCATTGGCTGATTGTTGTGGTATTCCTCAGCTTGCAAAGAAGTTGAACCACATTTTAGTGCAGCATATTA AAGGAATTCTTCCGGTGCTGAAGTCACGGATAAGTGATGCATTGGTTTCTACTGCTAAGGAGCATGCTAGCTACGGAGAAATCACTGAGTCTAAGGCCAG TCAAGGTGCTCTTCTCTTGAACATCTTTTCAAAGTATGGCAAGGCTTTTTCGTCAATGTTGGAGGGAGAAAATGATGAAACCTCGACATCCCAGCTATCT GGGTTAGCACGCATCAAATACGTCTTCCAGTCAATTTTCGTTAAGAGCTTAGAGGGCGTTGATCCTTGTGAGGATCTGACAGATGATGACATCCGGATCG CCATTCAAAACGCTTGTGGTAGTAATGCTGCTCTGTTTGTACCCGTTGGTCCGTTTGAAGTTCTTGTCTGGCGGCAAATTGCCAAGTTATTGTATCCAAG CCTTCAGTGTGCAAGGTTCATATATGATGAGCTAATAAAGATTAGCCATCGATGTCTAGCTAATGAACTGGAGCGGTTCCCTGTTCTGAAAAAACGCATG GATGAAGTAATTGGTAACTTTTTACGGGATGGACTTGAACCATCTGAGACAATGATTGACCATCTTATCGAGATGGAGATGGACTATATAAATACTGTCC ATCCGAATTTCATTGGAGGGACCAAGGCTGTGGACATGGCGGAGCAACAGGTCAAGTCTTCAAGACTTGCCGCTGCAATCCCCATAACTAAGGAACAGGA TGCCACAGAAGCTGATAAAGCACCACCAGCCTCGGAGAGGAGTCTGAAGTCTCGATCTATTCTTGGCAGAGCTGTCAATGGAGTTGCCGTCAATGGTGTA ATTCCTCCTGATCAGGGAGTAAGTCAGGTGGCAGATGCTGAGAAGGTTGCACCATCTGGCAATCTTGGAGGTTCTTCTTGGGGCATTACGTCGATTTTCT GTGGAAGTAATAGTTCACGTATTTCATCCGAGAAGAGCTCACCAAGTATGTCATACATGGAGGCAGTTCCTGGAAGCGATCCTTTGGACAAGAGCCTGTC TACGATCCATTTGCAAGAGGTTCTATGGCTAACCACGCTTGAAGAACTGCCGCTGGAAGCCTACTCTGTCGGAAGAGGACACAGTTCTGGTTCTGATGCA ACGGGGTTACCTAAACTCCATGGATTTCCTTTATCGTCGTCGATGAACACCGGCTCCAACGGTCTCTACACAGGCTCCTCTCCAAATCACCGCAAGACTA GGAAGTCGGCGTCGTCTTCTCCTTCTCAGTCCGGTGATCTGCAGTCGCATTATCACCCTATTGTTGATTCTAGCGGAAGCGTCAAGAGGGGCTTACATGC CTAG
AA sequence Show only first row Show all	>Lus10027905 pacid=23156904 polypeptide=Lus10027905 locus=Lus10027905.g ID=Lus10027905.BGIv1.0 annot-version=v1.0 MLSKSTPSCFNNPSMTAGVVPSSFILHPCEFCRWPRQGNGHRLRFKVVGQSPGNGWKLNDLDTKAVQERLSSWMSKTQNFVKQVASPLVKSGYTGKITSE KAVDALELEDVFLVEPTIKRNTSKGVLSMAALIFKALVAEPVYSDARNLVEYCCFRLLSRDSSSFHPSLKEAAFQRLIFITMLAWGNPYCKGNTSQEGSL KGQLVGKEAFVRIAPAIPGVADHSTVHNLFKALAGDERGISVKVWLTYIDELLKVHEGRKSYQTREYPQLQNEKVLCIGSSKKQPVLKWENGIGWPGKVI LTEKALYFEAVELFGKKSSIRLDLTRNGLQVQKTKVGPLGSVLFDSAVSVESTSGSDKLVLEFVDLGGELRRDAWHAFISEVVSLHKFLNEYGPDDGDPS LSQVYGAEKGKQRAIDSAINSIARLQALQFMRKLVDDPVKLGQFSYLRNAPYGEIVYQTLALNYWGGPLAKSFKEDDYQPTPRALSTDGVSKIKIHLPDI DGSIYLRQWMRSPSWVSSASTSFWKNSSTGKGVVLSKDVVVADLNLVEKAASACREKSEVAEKTQETIDAAMLKGIPSNIDLLKELILPLSMTAKNFEKL KRWEEPHLTISFLAFSYAIIFRNLLSHVLPMMMMVLAAGMLTLKGLKQQGRLGRSFGKVVIQDQPPSNTIEKIIAVKDAMQDVENYLQNLNVTLLKIRNI FLSGQPQVYNSLADCCGIPQLAKKLNHILVQHIKGILPVLKSRISDALVSTAKEHASYGEITESKASQGALLLNIFSKYGKAFSSMLEGENDETSTSQLS GLARIKYVFQSIFVKSLEGVDPCEDLTDDDIRIAIQNACGSNAALFVPVGPFEVLVWRQIAKLLYPSLQCARFIYDELIKISHRCLANELERFPVLKKRM DEVIGNFLRDGLEPSETMIDHLIEMEMDYINTVHPNFIGGTKAVDMAEQQVKSSRLAAAIPITKEQDATEADKAPPASERSLKSRSILGRAVNGVAVNGV IPPDQGVSQVADAEKVAPSGNLGGSSWGITSIFCGSNSSRISSEKSSPSMSYMEAVPGSDPLDKSLSTIHLQEVLWLTTLEELPLEAYSVGRGHSSGSDA TGLPKLHGFPLSSSMNTGSNGLYTGSSPNHRKTRKSASSSPSQSGDLQSHYHPIVDSSGSVKRGLHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71240			Plant protein of unknown funct...		Lus10027905 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	1.7	0.8761
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	2.4	0.8580
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	3.5	0.8552
AT3G02065			P-loop containing nucleoside t...		Lus10020088 [exp]	6.9	0.8481
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	7.2	0.8003
AT3G20720			unknown protein		Lus10011166 [exp]	8.1	0.8402
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	9.0	0.8278
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10011011 [exp]	11.7	0.8036
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	12.1	0.8367
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	12.7	0.8400

Compare expression of checked genes

Lus10027905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.