Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 967 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 926 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 244 / 2e-70 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 242 / 7e-70 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 241 / 2e-69 ADL1B DYNAMIN-like 1B (.1) AT3G60190 238 / 4e-68 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 238 / 4e-68 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60500 135 / 9e-33 DRP4C Dynamin related protein 4C (.1) AT1G60530 116 / 1e-28 DRP4A Dynamin related protein 4A (.1) AT1G59610 52 / 2e-06 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012076 [exp] 1323 / 0 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10014041 [exp] 1118 / 0 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 1094 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 1063 / 0 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 460 / 4e-146 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10023073 [exp] 246 / 3e-71 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 247 / 3e-70 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10003873 [exp] 242 / 1e-69 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 237 / 6e-68 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118300 [exp] 1092 / 0 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.017G041800 [exp] 1090 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 382 / 4e-127 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 258 / 7e-76 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 254 / 2e-74 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 250 / 1e-72 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G147500 [exp] 240 / 5e-69 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 239 / 1e-68 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 237 / 5e-68 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 230 / 2e-65 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01031 [flax] [poplar] Dynamin_M Dynamin central region CL0023 [flax] [poplar] P-loop_NTPase PF00350 [flax] [poplar] Dynamin_N Dynamin family CL0023 [flax] [poplar] PF02212 [flax] [poplar] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Lus10027906 pacid=23156895 polypeptide=Lus10027906 locus=Lus10027906.g ID=Lus10027906.BGIv1.0 annot-version=v1.0 ATGGACCTGAATGTATGTGTAAAAGAAGTTGAGGACTATATTAGAAACGATGAAGAACAAGCAGTGTCCGCTTCGGCGGCGGCGGCGCCTCTGGGATCGT CGGTGATCCCAGTGGTGAACAAGCTCCAGGACATCTTCGCCCAGCTCGGTAGCCAGTCCACGATCGAGCTGCCTCAGGTGGCGGTGGTCGGGAGCCAGAG CAGCGGCAAGTCGAGCGTGCTCGAGGCGCTGGTCGGTAGGGATTTCCTTCCTCGCGGCAACGACATCTGCACGCGGCGGCCGCTCGTCCTGCAGCTGGTC CAGACGAAGAGGAAAAACGACGGCAGCGAGGAAGAGTGGGGGGAGTTCCTGCACCGGCCTGATAAGCGCTTCGTCGACTTCTCTGAGATCCGGAGTGAAA TTGAGGCTGTGACTGCTAAAGAAGCAGGAGGGAACAAAGGTGTCTCAGACAAGCAGATTCGTCTGAAGATTTTCTCCCCTAATGTTCTTGATATAACGCT TGTAGATCTTCCTGGGATAACAAAAGTTCCCGTTGGCGACCAGCCCACTGATATTGAATCAAGAATCAGAACTATGATCATGTCATATATAAAAAAACCG AGCTGTCTTATACTTGCTGTTACCGCTGCAAACGCAGACTTGGCAAATTCAGATGCTCTTCAAGTTGCAGGAGTTGCTGATCCAGATGGCTACCGGACCA TTGGTGTAATCACAAAGTTGGATATCATGGATAGAGGTACTGATGCCCGCAATTTGTTACTTGGAAAAGTGATTCCCCTTCGACTTGGTTATGTAGGGGT TGTTAACCGTAGTCAGGAGGATATTAATCTCAACAGAAGTATAAAGGCTGCACTTGCCGCCGAAGAGAAGTTCTTCCGCAGCCATCCAGTTTATGGTACT GTGGCTGATCGTTGTGGCGTCCCCCAGCTTGCCAAGAAGTTGAACAATATCTTAGTGCAGCACATTAAAGCAATACTTCCTGTACTGAAGACTCGCGTAA GCGATGCACTTGTTTCAGTCGCAAAAGAGCATGCTAGCTATGGAGAAATCACTGAGTCTAAGGCTGGTCAAGGTGCTATTTTGCTGAATATCATCTCAAA ATACGCTGAAGCCTTTTCTTCAATGTTAGAAGGAAGGAATGAAGAATTGTCAACTTCTCAACTCTCTGGTGTAGCATTTATTGAATATGTTTTTCAGTCA ATTTTTGTCAGGACTCTAGAGGAGGTTGATCCTTGTGAGGATTTGACAGACGATGACATCCGTATTGCCATCCAAAACGCTTGTGGCCCTAAATCTTCAA TATTTGTAGCAGTTGTTCCATTTGAACTACTTGTGCGGCGACAAATTGCTCGTCTATTGGATCCGAGCCTTGAGTGTGCCAGATTCATATACGATGAGTT AATTAAGATTAGCCATCGCTGTCTAGTTGTGGTAGATGAACTACACCGGTTTCCTTTTCTGAGAAAACGCATGGATGAAGTTGTTGGGAATTTTTTACGG GATGGCCTTGAACCGTCCGAGACAATGATTGGGCATCTTATTGAAACCGAGATGGACTACATAAACACGTCCCATCCAAACTTTATCGGAGGGACCAAGT CTGTGGAAATGGCAGCACAGCAATTGAAGACTTCAAAGCTGAGCATCGCTGCTTCTAGGCAAAAGGATGGTGTAGAAGCTGATAAAGCGCCAGCATCTGA AAGGACACTGAAATCTCGATCTATTATTGGCAGGCCTGGGGTACGCCAGATCACAGATGCTGAAAAGGTTGGTCCCTCAGGGAATCATAGCGGATCTTCT TGGGGCATTTCATCAATTTTTGGTAGTAGCGACAGCGCTGTTAGTTCATCGAAAGAGAGCTCAACTAACAAGTCACACGTTGAGCCCGTTCATGGAGCAA CAGACTACGCAGAAAAGAGTGGTAGCTCGATCATTCGACTACGAGAGCCTCCAACAATCTTGAGACCCACAGATGGCCTCTCGGAGCAGGAGTCTATTGA AATTGCAGCCATTAAGTTGCTGTTACGATCATACTACGATATTGTTCGGAAGAACGTTTCAGATTTAGTTCCGAAAACCGTCATGCACTTCCTAGTTCAG CACACTAAACGGGAGCTGCACAATATTTTGATTAAAAAGCTCTACAGGGAGAACTTATTCGAGGAGATGTTACAAGAGCCTGACGAGATCGCTGTGAAAC GAAAGCAGACGAGAGAAACTCTCAAAGTCCTCCAACAGGCGTTTCGAACATTGGAAGAACTCCCTTTGGAAGCCGAAGCAGCCGAGAGGGGACACAGCAC GGTTGCCGATACAATCGGGCTTCCAAGAGTCCGAGGAACCAACACTTCGAACGGCTACCACTCACCTTCTCCAACTCGTTCAAGGTCCTCGAGGAAGTCG TCGCACTCTGGCGAGATCCAACAACCTTCTTACTCCAATGTTGATTCTAACGGAAGCAACGGCGGTGGGGGAGGAGTCTACATGCCAGGCCTGTATCCGT CAATTGACTGA
AA sequence Show only first row Show all	>Lus10027906 pacid=23156895 polypeptide=Lus10027906 locus=Lus10027906.g ID=Lus10027906.BGIv1.0 annot-version=v1.0 MDLNVCVKEVEDYIRNDEEQAVSASAAAAPLGSSVIPVVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLV QTKRKNDGSEEEWGEFLHRPDKRFVDFSEIRSEIEAVTAKEAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPTDIESRIRTMIMSYIKKP SCLILAVTAANADLANSDALQVAGVADPDGYRTIGVITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDINLNRSIKAALAAEEKFFRSHPVYGT VADRCGVPQLAKKLNNILVQHIKAILPVLKTRVSDALVSVAKEHASYGEITESKAGQGAILLNIISKYAEAFSSMLEGRNEELSTSQLSGVAFIEYVFQS IFVRTLEEVDPCEDLTDDDIRIAIQNACGPKSSIFVAVVPFELLVRRQIARLLDPSLECARFIYDELIKISHRCLVVVDELHRFPFLRKRMDEVVGNFLR DGLEPSETMIGHLIETEMDYINTSHPNFIGGTKSVEMAAQQLKTSKLSIAASRQKDGVEADKAPASERTLKSRSIIGRPGVRQITDAEKVGPSGNHSGSS WGISSIFGSSDSAVSSSKESSTNKSHVEPVHGATDYAEKSGSSIIRLREPPTILRPTDGLSEQESIEIAAIKLLLRSYYDIVRKNVSDLVPKTVMHFLVQ HTKRELHNILIKKLYRENLFEEMLQEPDEIAVKRKQTRETLKVLQQAFRTLEELPLEAEAAERGHSTVADTIGLPRVRGTNTSNGYHSPSPTRSRSSRKS SHSGEIQQPSYSNVDSNGSNGGGGGVYMPGLYPSID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	0	1
AT5G20200			nucleoporin-related (.1)		Lus10043265 [exp]	2.4	0.8449
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	6.5	0.8679
AT3G08960			ARM repeat superfamily protein...		Lus10007842 [exp]	6.5	0.8431
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036501 [exp]	8.7	0.8059
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	9.5	0.8790
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Lus10015638 [exp]	10.0	0.8645
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10029309 [exp]	10.1	0.8719
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Lus10020366 [exp]	18.3	0.7948
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Lus10002879 [exp]	21.5	0.8420
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	22.9	0.8631

Compare expression of checked genes

Lus10027906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.