Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19170 1394 / 0 ATPREP1, ATZNMP presequence protease 1 (.1.2) AT1G49630 1376 / 0 ATPREP2 presequence protease 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012075 [exp] 1889 / 0 AT3G19170 1484 / 0.0 presequence protease 1 (.1.2) Lus10019877 [exp] 1531 / 0 AT3G19170 1557 / 0.0 presequence protease 1 (.1.2) Lus10014039 [exp] 1516 / 0 AT3G19170 1560 / 0.0 presequence protease 1 (.1.2) Lus10014038 [exp] 0 / 1 AT3G19170 56 / 5e-13 presequence protease 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G103700 [exp] 1487 / 0 AT3G19170 1677 / 0.0 presequence protease 1 (.1.2) Potri.004G142300 [exp] 1471 / 0 AT3G19170 1723 / 0.0 presequence protease 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [flax] [poplar] Peptidase_ME PF00675 [flax] [poplar] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [flax] [poplar] Peptidase_ME PF08367 [flax] [poplar] M16C_assoc Peptidase M16C associated CL0094 [flax] [poplar] Peptidase_ME PF05193 [flax] [poplar] Peptidase_M16_C Peptidase M16 inactive domain
Representative CDS sequence Show only first row Show all	>Lus10027907 pacid=23157028 polypeptide=Lus10027907 locus=Lus10027907.g ID=Lus10027907.BGIv1.0 annot-version=v1.0 ATGGAGAGTACTGCACTTCTCCGATCAACCTCTGCAGCTCACAACCGATCCTTTTTCTTCCTCCGAAAGTCCTCTCTTCTTCGTCTGTCTGCGAATTCGT CGGTTTCCGCCGCTTCTGCCACCTGTCACCCCCTGCTCCGCCCTCGCTCTAGATTGCTCCCCGTACACGCTTCGGCGTCTCGGCCTTCTCCTCTTAGCTC GGATGGACGTTTCTTTGCTCTCGCTGTAGCTACAGAGCCTGCTCATCAGTTCTCGTCAGGTGCACTTGAACTTCCTTTCTGTTTGGCATGCAATGTTGGG GTTTCTGATGAGGTTGCGGAGAAGTTTGGATTCGAGAAGGTGTCAGAACAGTTCATTGATGAGTGCAAATCAAAGGCTGTGCTGTTCAAACATAAGAAGA CTGGTGCGGAGGTTATGTCCTTGTCAAATGACGATGAGAATAAGACGTTTGGAATTGTGTTTCGCACTCCCTTGAAGGATTCATCTGGGGTTGCACACAT ACTCGAACACAGTGTATTGTGCGGGTCAAGGAAGTATCCCTTGAAGGAGCCGTTTGCAGAGTTGATAAAAGGAAGTTTGAGTACTTATGTGAATGCTCTC ACCTTTCCTGATAGAACCTGCTACCCCATTGCTTCTGTAAATGAGAAGGAGTTGTATAATATGGCTGATGTCTATCTGGATGCTGTATTCTTCCCTAAAT GCGTGGAGGATGAAGTAATCTTTCGTCAAGAGGGCTGGCATTACGAACTCAATGATCCTTCCAAAGAGATATCTTACAAAGGTGTTGTCTTCAATGAGAT GAAAGGTGTCTATTCTAACCCGGATAATGTTCTGGCCCGGGAAGTTCGTCGAGCTGTTTTTCCGGACAATGCATATGGAGTTGACAGTGGAGGGGACCCA AAAGATATTCCCAAGCTGACATTTGAGCAATTTAAGGAGTTTCATCGCAAATATTACCACCCTAGCAATACAAGGATATGGTTTTATGGAGATGATAATC CATCCGAGCGATTGCGTCTCCTCAGTGAATACCTGGACATGTTTGGGCCAAGTTCATCTCCAATTGAATCTAGAATCAAGCCTCAGAGGCTTTTCTCAGA GCCAATAAGGGTCGTTCGTAAGTATCCAGCTAGAGATGGAGGTGACTTGGAAAAAAAGAATATTGTGTGCCTTAACTGGTTGCTGTCTGATAAGCTGTTG GACTTGGAAACTGAGCTTGCCCTTAAAGTCTTAAATCATCTTCTGTTGGGAACTCCTGCTTCTCCATTGATGAAGATCTTGCTCGAAAGTGGTTTAGGAG ATGCCTTTTTTGGGGCCGGACTAGAAGATTACCTACTTCAACCTCAATTCAGTGCTGGACTGAAAGGTGTGACTGTAGAGAATATTCAGAAGGTAGAGGA TTTAATATTGAGTACGCTTGCAAAGTTAAGTGAAGAAGGATTCGAGACGGATCTTGTGGATGCATCCATAAACACAATTGAGTTTGACCTCCGAGAAAAC AACACCGGAAGATTTCCCCGCGGCTTGGAACTGATGTACAAATCCATTGAAAAATGGCTTTATGATTTGGATCCCTTTGAGCCTTTAAAATATGAGAAAC CATTGATGGCCCTGAAATCCAGAATAGCCAAGGAAGGGCCTAAAGCTGTTTTCTCACCGTTGATTGAGAAACTCATCCTGAACAATCAACACCGTGCTAC TCTGGAAATGCATCCTGATCCAGAGAAAGCTTCTCGTGATGATTCTTCCGAGAGGGAGATATTGGCAAAGTTGAAAGCGAGTATGACAGAGCAAGATCTT GCTGAGCTAACACGTGCAACACATGAATTAAGACTGAGGCAGGAAACACCAGACTCCCTGGAAGCTGCGAAAACTTTTCCATTCCTTCGTTTGGATGATA TTCCGAAAGAAAGCACTCCCGTTCCCATTGAGGTTGGGGAGATAAATGGAGCAAAAGTACTGCAGCATGACCTGTTTACAAATGATATCCTTTATGCGGA AATAGCATTCGATATGAGATCACTGAAGCAAGAGCTTCTTCCCTTGGTACCACTTTTCTGCCAATCGCTACTTGAGATGGGTACAAAAGATTTGACTTTT GTTCAACTTAGTCAACTAATTGGAAGTAAAACAGGGGGCATATCAGTCTTCCCTTTCACATCCTCTATCCATGGGCAGGCTAATCCATGCAGTCATATAA TAGTTCGAGGGAAGGCCATGGCGGGACGTGCAGAAGACTTGTTTCATCTGATTAAATGTGTTCTCCAAGAAGTGCAATTCACAGACCAGCAGCGATTCAA GCAGTTTGTTTCACAGAGAAAAGCCGGAGTGGAGAGTCGTTTACTCGGCTGTGGCCATCAAATTGCAATGACAAGGATGGATGGCAAGTTTACGACTTCC GGGTGGATTTCCGAGCAAATGTGTGGTGTCAGCTACCTAGAGTCCCTGCAAGCCCTTGAACAGAGGGTTGATCAAGATTGGGCAGGAATTTCTTCATCCC TCGAAGAAATTCGCACATCTTTATTGTCCAGGGATGGCTGCTTGGTCAATCTGACTGCTGATGGAAAGAACCTCGCTTGCTCTGAGAAGTACGTCAGCAA GTTCCTCGACTTTCTTCCTAGCAACTCACCTGCTTCAGCAGCTTCTTCTTGGAGTGCTCGGCTTCCTCCCGGAAATGAAGCTATAGTGATCCCTTCACAG GTAAATTTCGTTGGCAAAGCGGTTAACCTTTACCAAACTGGTTATCAAATCCACGGGAGCGCATATGTCATCTCGAAACACCTCACTAATACATGGCTAT GGGATCAAGTTCGTTTGATGGGTGGTGCATACGGAGGAGCGTGCATGCTTAATCCATTCTCGGGAGTGTTTTACTTCATATCTTGGAGTGACCCAAACCT GCTGAAAACTCTCAATACATATGACGCGACTGGAGGTTTCTTACAGGATGCAGAGATCGACAATGATTCTCTCACGAAATCCATAATCGGAACCATTGCA GATGTAGATCCGTATCAGCTTCCGGATGCCAAAGGTTACAACAGCATGTTGAGGTACTTGCAAGGTTTCACCGAAGAAGAACGGCAACAGAGGCGGGAAC AGATACTTTCGACTAGCTTGAAGGACTTCAAGGAATTTGCAGACGTGATCGACGCTGTCAAGAACAAAGGTGTCTCGGTGGCTGTGGCGTCTGCAAGCCA CATCGATGCAGCACACAAGGATTTCCCTGGCTATTTCCATGTGAAGAAGGTCCTCTAA
AA sequence Show only first row Show all	>Lus10027907 pacid=23157028 polypeptide=Lus10027907 locus=Lus10027907.g ID=Lus10027907.BGIv1.0 annot-version=v1.0 MESTALLRSTSAAHNRSFFFLRKSSLLRLSANSSVSAASATCHPLLRPRSRLLPVHASASRPSPLSSDGRFFALAVATEPAHQFSSGALELPFCLACNVG VSDEVAEKFGFEKVSEQFIDECKSKAVLFKHKKTGAEVMSLSNDDENKTFGIVFRTPLKDSSGVAHILEHSVLCGSRKYPLKEPFAELIKGSLSTYVNAL TFPDRTCYPIASVNEKELYNMADVYLDAVFFPKCVEDEVIFRQEGWHYELNDPSKEISYKGVVFNEMKGVYSNPDNVLAREVRRAVFPDNAYGVDSGGDP KDIPKLTFEQFKEFHRKYYHPSNTRIWFYGDDNPSERLRLLSEYLDMFGPSSSPIESRIKPQRLFSEPIRVVRKYPARDGGDLEKKNIVCLNWLLSDKLL DLETELALKVLNHLLLGTPASPLMKILLESGLGDAFFGAGLEDYLLQPQFSAGLKGVTVENIQKVEDLILSTLAKLSEEGFETDLVDASINTIEFDLREN NTGRFPRGLELMYKSIEKWLYDLDPFEPLKYEKPLMALKSRIAKEGPKAVFSPLIEKLILNNQHRATLEMHPDPEKASRDDSSEREILAKLKASMTEQDL AELTRATHELRLRQETPDSLEAAKTFPFLRLDDIPKESTPVPIEVGEINGAKVLQHDLFTNDILYAEIAFDMRSLKQELLPLVPLFCQSLLEMGTKDLTF VQLSQLIGSKTGGISVFPFTSSIHGQANPCSHIIVRGKAMAGRAEDLFHLIKCVLQEVQFTDQQRFKQFVSQRKAGVESRLLGCGHQIAMTRMDGKFTTS GWISEQMCGVSYLESLQALEQRVDQDWAGISSSLEEIRTSLLSRDGCLVNLTADGKNLACSEKYVSKFLDFLPSNSPASAASSWSARLPPGNEAIVIPSQ VNFVGKAVNLYQTGYQIHGSAYVISKHLTNTWLWDQVRLMGGAYGGACMLNPFSGVFYFISWSDPNLLKTLNTYDATGGFLQDAEIDNDSLTKSIIGTIA DVDPYQLPDAKGYNSMLRYLQGFTEEERQQRREQILSTSLKDFKEFADVIDAVKNKGVSVAVASASHIDAAHKDFPGYFHVKKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10027907 [exp]	0	1
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014038 [exp]	3.5	0.9045
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040762 [exp]	6.0	0.8683
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	6.8	0.8925
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10015850 [exp]	7.1	0.8633
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	14.9	0.8337
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10019463 [exp]	23.9	0.8825
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	24.4	0.8737
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10024511 [exp]	26.2	0.8859
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10019183 [exp]	31.8	0.8749
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10012479 [exp]	32.5	0.8684

Compare expression of checked genes

Lus10027907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.