Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44530 555 / 0 Phosphoribosyltransferase family protein (.1.2) AT2G35390 549 / 0 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 541 / 0 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT1G10700 59 / 2e-09 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 53 / 2e-07 Phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012074 [exp] 687 / 0 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10040098 [exp] 539 / 0 AT2G35390 639 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10030948 [exp] 511 / 0 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10010935 [exp] 64 / 4e-11 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 63 / 1e-10 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 62 / 2e-10 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10020768 [exp] 62 / 2e-10 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10036849 [exp] 55 / 6e-08 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10006202 [exp] 55 / 6e-08 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G179600 [exp] 608 / 0 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.003G088400 [exp] 578 / 0 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.001G145700 [exp] 571 / 0 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.002G059700 [exp] 59 / 2e-09 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.005G202100 [exp] 57 / 5e-09 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.010G045000 [exp] 55 / 4e-08 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10027908 pacid=23157059 polypeptide=Lus10027908 locus=Lus10027908.g ID=Lus10027908.BGIv1.0 annot-version=v1.0 ATGGTAACTTATGTCTGGACCTGTTTCCTAAAGAGATGTCATTTGGCGGAGCCGCTCAAGTTTATGAACGGGAAGCCATCCATCCCAGTCGTTCCTAGTC ATGAACATTCACTCCCAAGCTTTGTATCTTCTGGACCTCAAAGAGGCAGCATTGTTAATAAGCACGATACAAAGCTTCGAATATTCTCTGGCACGGCTAA TCCTTCTCTCTCTCAGGAAATTGCGTGTTACATGGGTTTAGAACTCGGGAAAATTGACATAAAACGTTTTGCTGATGGTGAGATCTATATCCAGCTCCAA GAAAGTGTACGGGGCTGTGATGTATTTCTTGTGCAACCCACATGTCCTCCTGCAAATGAGAATCTTATGGAACTGTTGGTAATGATTGATGCTTGTCGGA GGGCATCGGCCAAAAATATTACTGCGGTGATTCCATATTTTGGGTATGCTAGAGCTGACAGAAAGACTCAAGGGCGTGAATCCATTGCTGCCAAACTCGT GGCAAATTTGATCACAGAAGCAGGTGCCAACCGCGTGCTTGCTTGTGATCTCCATTCGGGGCAGTCTATGGGCTATTTTGACATCCCCGTAGACCACGTG TATGGCCAGCCTGTGATATTAGACTACCTTGCTAGCAAGAGGATATGTTCCGATGACTTGGTAGTGGTATCCCCTGATGTTGGTGGTGTCGCAAGGGCCC GTGCGTTTGCCAAGAAATTATCAGATGCTCCTCTTGCAATTGTAGATAAAAGGCGGCATGGACACAACGTTGCGGAGGTAACACTCAATTGGAACATGTT TTATAATGGGACAATTTCGAAAGGTGCAGCACTATTGCATCAAGAAGGAGCCAGAGAGGTCTATGCCTGCACCACTCACGCTGTTTTCAGTCCTCCTGCA ATAGAGAGGCTATCAAGCGGTCTGTTCCAAGAGGTCATCGTGACGAACACGATCCCAGTGCTGGAAAAGAACTACTTCCCGCAGCTCACCATCTTGTCTG TGGCTAACCTCCTTGGGGAGACCATATGGCGGGTCCACGATGATTGCTCCTCTGCAGTCCAGACATTTGATGCTTTGTTGGGTTGCTTTTGCCAGGGTGG TTTCGAACCCTATTCGAGCCTTGGGATCGATTGA
AA sequence Show only first row Show all	>Lus10027908 pacid=23157059 polypeptide=Lus10027908 locus=Lus10027908.g ID=Lus10027908.BGIv1.0 annot-version=v1.0 MVTYVWTCFLKRCHLAEPLKFMNGKPSIPVVPSHEHSLPSFVSSGPQRGSIVNKHDTKLRIFSGTANPSLSQEIACYMGLELGKIDIKRFADGEIYIQLQ ESVRGCDVFLVQPTCPPANENLMELLVMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHV YGQPVILDYLASKRICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVTLNWNMFYNGTISKGAALLHQEGAREVYACTTHAVFSPPA IERLSSGLFQEVIVTNTIPVLEKNYFPQLTILSVANLLGETIWRVHDDCSSAVQTFDALLGCFCQGGFEPYSSLGID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44530			Phosphoribosyltransferase fami...		Lus10027908 [exp]	0	1
AT3G02490			Pentatricopeptide repeat (PPR)...		Lus10032092 [exp]	5.8	0.8900
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10027408 [exp]	9.2	0.8616
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	13.4	0.8658
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10005855 [exp]	16.7	0.8554
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10013236 [exp]	21.2	0.8728
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10028106 [exp]	24.0	0.8276
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10029436 [exp]	24.7	0.8288
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	26.0	0.8212
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	26.1	0.8657
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10040512 [exp]	26.5	0.8564

Compare expression of checked genes

Lus10027908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.