Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48700 275 / 2e-91 ATCXE13 carboxyesterase 13 (.1) AT3G48690 270 / 3e-89 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 261 / 3e-86 alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 257 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) AT1G49660 244 / 4e-79 ATCXE5 carboxyesterase 5 (.1) AT1G49650 241 / 3e-77 alpha/beta-Hydrolases superfamily protein (.1) AT1G49640 227 / 9e-73 alpha/beta-Hydrolases superfamily protein (.1) AT5G16080 143 / 6e-40 ATCXE17 carboxyesterase 17 (.1) AT1G68620 120 / 2e-31 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012073 [exp] 545 / 0 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10019882 [exp] 321 / 3e-109 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10014036 [exp] 281 / 1e-93 AT3G48700 321 / 9e-110 carboxyesterase 13 (.1) Lus10021745 [exp] 250 / 2e-81 AT1G47480 363 / 2e-126 alpha/beta-Hydrolases superfamily protein (.1) Lus10021743 [exp] 248 / 2e-80 AT3G48700 291 / 2e-97 carboxyesterase 13 (.1) Lus10014033 [exp] 248 / 1e-79 AT1G47480 246 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) Lus10042662 [exp] 245 / 1e-79 AT1G47480 376 / 3e-131 alpha/beta-Hydrolases superfamily protein (.1) Lus10019884 [exp] 216 / 3e-69 AT1G47480 198 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) Lus10034068 [exp] 187 / 6e-56 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G104000 [exp] 339 / 2e-116 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 336 / 3e-115 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 331 / 3e-113 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 325 / 5e-111 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G104400 [exp] 319 / 1e-108 AT3G48700 265 / 2e-87 carboxyesterase 13 (.1) Potri.009G104900 [exp] 309 / 4e-104 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G032800 [exp] 263 / 1e-86 AT1G47480 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G105100 [exp] 261 / 5e-86 AT2G03550 274 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G103800 [exp] 256 / 2e-84 AT1G49660 233 / 2e-75 carboxyesterase 5 (.1) Potri.014G032600 [exp] 243 / 7e-79 AT1G47480 297 / 3e-100 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10027909 pacid=23156989 polypeptide=Lus10027909 locus=Lus10027909.g ID=Lus10027909.BGIv1.0 annot-version=v1.0 ATGGAATCTTTACCCTCCGCCGCCGACGACTCAATCTCCGACGACGAACTCCCGAGAGAGTTTCCGCCGTTCCTCCGGATATACAAGGACGGCACAGTCG AGCGCCTCGTCGGCACCAAAACTGTCCCGCCCGATCCAACTCCCGCCGTCCAATCCAAGGACGTTACCTACTCCGACGAACTCAACCTCCGCTCCCGAAT CTACCTTCCTAAATCACAGATCCACAACAGCAAGAAGAAGAAGCTTCCTGTCTTAGTCTACTACCACGGCGGCGCTTTTTTCGTGGAATCAGCTTTCTCC CCTACATACCACACCTACCTCAACTCCATAGTCGCGGCGGCGAACGTAATCGCAGTCTCAGTGGACTACCGCCGCGCTCCGGAGCATCCGTTGCCGATCG CCTACGACGACTCCTGGTCCGCTCTGAAGTGGATCGGGTCGCACAGATCCGGTTCCGGATCCGAGGAGTGGCTGAACGAGCACGCAGATCTGGACTCCGT GTTCGTAGCAGGGGACAGCGCGGGAGCGAACATAGCGCACCGGGTGGCGATCCGGTTCGGGATCGAACCGATCGGAGGGATTGGCCTCACCGGACTGATC CTGATTCATCCGTACTTCTGGGGGAGCGATCCGATCGGGGAAGAGGAAGAGGAGATGTTTCGGGAAGGCGCGTTGGAGTTCTGGAAGCTGGCGTGTCCGA CGACGATCGGCGGGGACGATCCGTGGGTGAATCCGGCGGCGGATCCGGATCTGTGGAGGCTAGGGTGCGGGAAGGTGGTGGTGGCGGTGGCGGAGAAGGA TTTCTTGAAGGAGAGAGGGAAGCTTTACTGTGAGGTGTTGGAGCAGAGCGGGTGGAAAGGAGAGGTTGAGATTTTGGAAGCCAAAGGTGAAGGCCATGTT TTCCACCTGATGGATGGTGAGTGTGATAACGCTGTTGCTATGAGGGAGAAGATCTGCTGCTTCATCCATGGTTAG
AA sequence Show only first row Show all	>Lus10027909 pacid=23156989 polypeptide=Lus10027909 locus=Lus10027909.g ID=Lus10027909.BGIv1.0 annot-version=v1.0 MESLPSAADDSISDDELPREFPPFLRIYKDGTVERLVGTKTVPPDPTPAVQSKDVTYSDELNLRSRIYLPKSQIHNSKKKKLPVLVYYHGGAFFVESAFS PTYHTYLNSIVAAANVIAVSVDYRRAPEHPLPIAYDDSWSALKWIGSHRSGSGSEEWLNEHADLDSVFVAGDSAGANIAHRVAIRFGIEPIGGIGLTGLI LIHPYFWGSDPIGEEEEEMFREGALEFWKLACPTTIGGDDPWVNPAADPDLWRLGCGKVVVAVAEKDFLKERGKLYCEVLEQSGWKGEVEILEAKGEGHV FHLMDGECDNAVAMREKICCFIHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48690		ATCXE12	ARABIDOPSIS THALIANA CARBOXYES...		Lus10027909 [exp]	0	1
AT5G13890			Family of unknown function (DU...		Lus10041505 [exp]	2.4	0.8992
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	2.4	0.9128
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	2.6	0.9176
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	4.5	0.8843
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	4.9	0.9079
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	5.0	0.9015
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	6.5	0.8970
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030889 [exp]	6.6	0.8567
AT3G12050			Aha1 domain-containing protein...		Lus10017240 [exp]	7.3	0.9084
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	10.2	0.8720

Compare expression of checked genes

Lus10027909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.