Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15730 479 / 7e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34420 476 / 1e-169 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50620 414 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012072 [exp] 622 / 0 AT2G15730 510 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021749 [exp] 399 / 1e-139 AT2G15730 402 / 2e-141 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042667 [exp] 399 / 2e-139 AT2G15730 405 / 4e-142 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10002971 [exp] 396 / 2e-138 AT3G50620 451 / 2e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009348 [exp] 396 / 2e-138 AT3G50620 454 / 1e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105200 [exp] 510 / 0 AT2G15730 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G143300 [exp] 496 / 1e-177 AT2G15730 563 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G034300 [exp] 432 / 2e-152 AT2G15730 491 / 7e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G042100 [exp] 431 / 7e-152 AT3G50620 509 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G136900 [exp] 425 / 9e-150 AT3G50620 532 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10027910 pacid=23157081 polypeptide=Lus10027910 locus=Lus10027910.g ID=Lus10027910.BGIv1.0 annot-version=v1.0 ATGGGGGCGCTCATACAATTTGAGAGGAGGGAGATAACCCTAAACGCTAGGAAGCATAAGGATTCCATCCTTGGGAAGACACCAAAGAAGTCTACATTAC TATTGAGAATGGTTGTTGTGGTACTTATAGTATTCAGCAGTGTGTACATATCATCAGTCTGTCTCAAACAAGTCGGCATCGCTAGCAATCCTATCATCAT CGACGTCATGGAAAAGGAGCTGTGTCCGATCCCTAATATCGAGCCGTGGGAGATTCCTTATGTGCATTACCCGAAACCGGAGATGTATAGCAGGGCAGAA TGCGAGTGCAATCCGGTCCGGTACTTTGCCATTCTGTCGATGCAGAGGTCCGGGAGCGGATGGTTCGAGACGCTGTTGAACAATCATACCAATGTGAGCT CAAACGGGGAGATATTCTCTGTTAAGGTGAGGAGGAGGAATGTTTCGACCATCATCGAGACTTTGGATAGGGTCTATAACTTGGACTGGTTGAGTAGCGC GTCCAAGAATGAGTGCACGGCTGCTGTCGGGTTCAAATGGATGCTTAACCAGGGTGTGATGCAACATCACGAAGAAGTCGTGGAGTACTTCAAAACACGA GGGGTTTCGGCCATCTTCCTATTCAGGAGAAACCTTCTACGAAGGATGGTCTCCGTGCTTGCCAACGAATACGATCGACAAGCAAAGCTGTTGAATGGAA CTCACAAGTCTCACGTCCATTCGCCTCACGAGGCAGAGATACTTGCTAGGTACAAGCCCTACATGAATGCGACGTCATTGATTCACAACCTAAAGCAAGT AGAGAACATGACCGTGCAAGCCTTGGAATACTTCAACAGCACCCGGCACATGGTTCTTTACTACGAGGACATCGTGCAGAACCCCACTAAACTATCTGGG GTCCTGGACTTCCTCAAGGTTCCTCAGAGAGAGCTGAAGAGTCGTCAGGTGAAGATTCACAAAGGATCATTATCAAATCAGGTTCAGAACTGGGAGGAAG TCCAAGCAGCGCTACAGGGGACCGAATATCAATCCTTCCTTGACATGGATTACTGA
AA sequence Show only first row Show all	>Lus10027910 pacid=23157081 polypeptide=Lus10027910 locus=Lus10027910.g ID=Lus10027910.BGIv1.0 annot-version=v1.0 MGALIQFERREITLNARKHKDSILGKTPKKSTLLLRMVVVVLIVFSSVYISSVCLKQVGIASNPIIIDVMEKELCPIPNIEPWEIPYVHYPKPEMYSRAE CECNPVRYFAILSMQRSGSGWFETLLNNHTNVSSNGEIFSVKVRRRNVSTIIETLDRVYNLDWLSSASKNECTAAVGFKWMLNQGVMQHHEEVVEYFKTR GVSAIFLFRRNLLRRMVSVLANEYDRQAKLLNGTHKSHVHSPHEAEILARYKPYMNATSLIHNLKQVENMTVQALEYFNSTRHMVLYYEDIVQNPTKLSG VLDFLKVPQRELKSRQVKIHKGSLSNQVQNWEEVQAALQGTEYQSFLDMDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15730			P-loop containing nucleoside t...		Lus10027910 [exp]	0	1
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	2.0	0.8094
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	6.3	0.8555
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	17.0	0.8050
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	20.6	0.7798
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10007851 [exp]	21.1	0.7973
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	22.4	0.7904
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10014628 [exp]	30.6	0.7624
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	31.2	0.7876
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	32.2	0.7839
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	51.0	0.7229

Compare expression of checked genes

Lus10027910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.