Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19130 399 / 2e-138 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 397 / 5e-138 ATRBP47A RNA-binding protein 47A (.1) AT1G47500 374 / 4e-129 ATRBP47C' RNA-binding protein 47C' (.1) AT1G47490 373 / 1e-128 ATRBP47C RNA-binding protein 47C (.1.2) AT5G54900 315 / 3e-106 ATRBP45A RNA-binding protein 45A (.1) AT4G27000 310 / 3e-104 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G11650 304 / 1e-101 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 293 / 2e-97 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G54080 132 / 2e-35 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 124 / 3e-32 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012070 [exp] 560 / 0 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10012071 [exp] 560 / 0 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 463 / 1e-165 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 440 / 2e-156 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10021754 [exp] 397 / 6e-138 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 319 / 1e-107 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 318 / 6e-107 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018345 [exp] 313 / 2e-105 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 233 / 1e-73 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143400 [exp] 458 / 5e-162 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 451 / 3e-159 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 410 / 3e-143 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 394 / 7e-137 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 330 / 4e-112 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G138400 [exp] 327 / 8e-111 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G423400 [exp] 327 / 1e-110 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 317 / 5e-107 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G166100 [exp] 124 / 2e-32 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 122 / 9e-32 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10027911 pacid=23156981 polypeptide=Lus10027911 locus=Lus10027911.g ID=Lus10027911.BGIv1.0 annot-version=v1.0 ATGTATCTGCAGGTTTCATCTGTTAAGGTTATAAGGAATAAGCAGACCGGTCAATCGGAAGGGTATGGTTTCGTCGAGTTCTACTCACACTCAGCAGCAG AGAAAGTGCTACAAACCTACAGTGGATGTGTAATGCCCAACTCGGACCAGCCTTTCCGTCTGAACTGGGCAACCTTTGCTGGGGAAAGACGACAACAAGA ACCGAACACTGATCTGTCTATATTCGTTGGGGATTTGGCTGCAGATGTGACAGATTCTTTGTTGCAGGAGACCTTTGCTGGGAAGTATCCTTCAGTTAAG GGAGCGAAAGTAGTTATCGACTCCAATACTGGCAGGACGAAAGGCTATGGCTTTGTTAGGTTTGGAGATGAAAACGAGAGGTCTCAAGCCATGACAGAGA TGAACGGTGTTTATTGCTCGACCAGGCCCATGCGGATAGGTGTTGCCACTCCCAAGAAGTCTTCCCCTTTCCAACAACAATACTCTTCACAAGGAAATGG TACTTCAGCTCATGGTTCCAATGGTGATGTCGATTCCAATAACACAACTATATTCGTAGGAGGAATTGACTCTGATGTTACCGAGGAAGATCTCAGGCAG CCATTCGGTCAGTTTGGTGATGTTGTCTCGGTGAAAATACCCGTTGGGAAAGGCTGCGGTTTCGTGCAATTCGCCAACAGAAAAGATGCAGAGGAAGCTC TTCAGGGTTTGAATGGCACTTTCATTGGGAAACAGATGGTTCGCCTTTCTTGGGGCCGTAGTCCTGCAAACAAGCAGTGGAGAGGGGATCACGGCAACCA GTGGAACAATGGAGGAGGTTACTATGGAGGCCAAGGCTACGGTGGTGGGTATGGATACACCGCAGCTCAGCCGAATCAGGACAATGGCACGTACGCTGCA GCTGCAGCCTCGGGAGCTTCGTAA
AA sequence Show only first row Show all	>Lus10027911 pacid=23156981 polypeptide=Lus10027911 locus=Lus10027911.g ID=Lus10027911.BGIv1.0 annot-version=v1.0 MYLQVSSVKVIRNKQTGQSEGYGFVEFYSHSAAEKVLQTYSGCVMPNSDQPFRLNWATFAGERRQQEPNTDLSIFVGDLAADVTDSLLQETFAGKYPSVK GAKVVIDSNTGRTKGYGFVRFGDENERSQAMTEMNGVYCSTRPMRIGVATPKKSSPFQQQYSSQGNGTSAHGSNGDVDSNNTTIFVGGIDSDVTEEDLRQ PFGQFGDVVSVKIPVGKGCGFVQFANRKDAEEALQGLNGTFIGKQMVRLSWGRSPANKQWRGDHGNQWNNGGGYYGGQGYGGGYGYTAAQPNQDNGTYAA AAASGAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10027911 [exp]	0	1
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	1.4	0.9589
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10000672 [exp]	1.7	0.9633
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10037620 [exp]	2.6	0.9374
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10038845 [exp]	3.0	0.9516
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	3.2	0.9337
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10037365 [exp]	3.5	0.9403
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	5.3	0.9436
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10014964 [exp]	6.3	0.9264
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	6.9	0.9300
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Lus10001518 [exp]	7.1	0.9292

Compare expression of checked genes

Lus10027911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.