Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15760 156 / 6e-45 Protein of unknown function (DUF1645) (.1) AT3G62630 70 / 5e-13 Protein of unknown function (DUF1645) (.1) AT2G26530 49 / 2e-06 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT3G27880 44 / 8e-05 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012069 [exp] 510 / 0 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 218 / 6e-68 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 215 / 8e-67 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10021757 [exp] 78 / 7e-16 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10020690 [exp] 78 / 8e-16 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 77 / 1e-15 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10029855 [exp] 74 / 1e-14 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10006479 [exp] 69 / 5e-13 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 69 / 9e-13 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143500 [exp] 164 / 3e-47 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 159 / 2e-45 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 98 / 7e-23 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 94 / 3e-21 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.013G010400 [exp] 66 / 1e-11 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 62 / 2e-10 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 42 / 0.0005 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10027912 pacid=23157050 polypeptide=Lus10027912 locus=Lus10027912.g ID=Lus10027912.BGIv1.0 annot-version=v1.0 ATGGAGGTGGCCATACCAACTCCCGCGACGGAATTTAACTTCGACAGCTCTTGCTCTTCCCCTTACCTCACCGCTCCGTCCAGTCCTCTGCCGTTCGGCT CCACGTCCGCCGGCAACAACTCCTTCTTCAGCGCCCCTACTTCCCCTACTCCGACCACCGGCAACAGACCTTCCAATTCCGACTTCGAATTCGACTTCGG CGGCCAAATTTCCAGATCCTCCTTCTCCGCAGCCGACGAGCTCTTCCACTGCGGCAAGATCCTCCCCCTGAGATCCCCTCCCGATTCCGATTTCACCACT TCTCCGAAGAAAACTAGGGACTTCGATTTTGAAGAACAGGAGTCGGAGGATCGTGGAAGAGAATGGAGGATTTTCACTTCCTGCTCTTCCTACAATTTCG ACTCCGATGTCAACTCCTCCTCCGCCGCCTCCTCCGGCCGTCGCGGGACCACCAGGTCGCTCCCACCGATGAGGATCTCCGACGTGATGTCGGAGCAGGA TGACGACGACTACGGCTCGGAAATCGGAGGGAAAACAAAGCAGTCTTACGCGGCGGCGTTTCTGTCGGCGGTGAAGGGAGGTGGAGGACGGAACAAGAAG TGGAGGATTAGGGACTTTTTGCTGTTCAGAAGCGCGTCGGAAGGGAGGGCGACGAGCTCAGAGCAGCTGATGGCGGCCAAGTACGCGGTTCTGCCCAGGA GGAAGTCTCTGCCACCGTCGCCGGCGGCGGAGAATGTCGGTAGTGGTAAGGGATCGAGTTTCCGTTCGACGGCAGAGAGTTCATTCGGGAGCTCGCGGAG GCTGAGGCAGTCGGCGGCGGCGGTATCGGCGCACGAAATGCATTATACGGTGAACAGAGCGGCGGCAGAGGAAATGAAGAGGAAAACTTATCTGCCGTAT AAGCAAGGGTTGTTGGGTTGCTTGGGGGTTAATTCGGTTCAATCCGGTCGGACCAGACATCTCGAGAGGCATTGGATCGTTGACACGTGGGTGAATAAAA AAGAAACATTTTGCAATTCTGGCCGAGTTCGCAAAGACTCGAGGTTGAATCGGTATAATTAA
AA sequence Show only first row Show all	>Lus10027912 pacid=23157050 polypeptide=Lus10027912 locus=Lus10027912.g ID=Lus10027912.BGIv1.0 annot-version=v1.0 MEVAIPTPATEFNFDSSCSSPYLTAPSSPLPFGSTSAGNNSFFSAPTSPTPTTGNRPSNSDFEFDFGGQISRSSFSAADELFHCGKILPLRSPPDSDFTT SPKKTRDFDFEEQESEDRGREWRIFTSCSSYNFDSDVNSSSAASSGRRGTTRSLPPMRISDVMSEQDDDDYGSEIGGKTKQSYAAAFLSAVKGGGGRNKK WRIRDFLLFRSASEGRATSSEQLMAAKYAVLPRRKSLPPSPAAENVGSGKGSSFRSTAESSFGSSRRLRQSAAAVSAHEMHYTVNRAAAEEMKRKTYLPY KQGLLGCLGVNSVQSGRTRHLERHWIVDTWVNKKETFCNSGRVRKDSRLNRYN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	0	1
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10014133 [exp]	2.0	0.8455
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	6.0	0.8338
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	9.2	0.8547
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	19.0	0.7778
AT5G06280			unknown protein		Lus10016973 [exp]	19.7	0.8191
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	24.3	0.8080
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10029955 [exp]	27.6	0.7929
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	28.2	0.8206
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	37.9	0.7936
AT4G24370			unknown protein		Lus10010164 [exp]	38.9	0.7579

Compare expression of checked genes

Lus10027912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.