Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49590 182 / 3e-57 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT3G54230 41 / 0.0007 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012068 [exp] 306 / 1e-97 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010955 [exp] 41 / 0.0009 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G105500 [exp] 244 / 3e-81 AT1G49590 221 / 2e-72 C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF06220 [flax] [poplar] zf-U1 U1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10027913 pacid=23157001 polypeptide=Lus10027913 locus=Lus10027913.g ID=Lus10027913.BGIv1.0 annot-version=v1.0 ATGACGGAGTATTGGGTGAGCCAAGGGAAGAAATGGTGCGATTTCTGCAAAATCTTCATAGCGAACAATCCTTCGAGCATAAGGAACCACGATTTGGGCC AGAAGCACAAGGACAATGTCTCCGAGCGGCTTGCGGCCATGCGGAAGGACAACATTGCCAAGGATAAGGCCGACAAGGCAGCCGCCGCTGCTCTCGAACA GATTGAAGCCAAAGCTAAGCGTAGCTATCAAAAGGATGTGGCGAATTTGAAGGAGGCTGGTGATGCCCGGGCACTGGATTTTCAAGAAGATAGCAAGGAG AAATGGGATTACGACAGCACTACAGGCTACTACTACAACTCGAAAAATGGTCTACACTATGACTCAAACTCGGGCTTTTACTATTCTGATTCCATAGGCA AGTGGGTAACGCAACAGGAGGCATATGCTGCCGTCAAGGCTTCTTCGGATGGAAAGCTCAAAGACTCGAGTCTGAGGAAACCCTCCATGCCGACTGTTCA ATCGACAAGTGGGCCACCACCTGGTCCAGTCGTTTCGGCGTCCTTAAACCCCACGAGATCCATCAAAGGTGCAGCTTCAAAAGTTGTCGTGGTCAACAAG AGAAAGAGAGACGATAAGAAGTCAAAGGTTTTGACCGAAGAAGACAAAGCTGCACTTAAAGCTAGGGAGGCTGCGAAAAAGAGAGTCGAAGAGAGGGAGA AAGGACTCCTCGGCCTTTACAAGCGGTGA
AA sequence Show only first row Show all	>Lus10027913 pacid=23157001 polypeptide=Lus10027913 locus=Lus10027913.g ID=Lus10027913.BGIv1.0 annot-version=v1.0 MTEYWVSQGKKWCDFCKIFIANNPSSIRNHDLGQKHKDNVSERLAAMRKDNIAKDKADKAAAAALEQIEAKAKRSYQKDVANLKEAGDARALDFQEDSKE KWDYDSTTGYYYNSKNGLHYDSNSGFYYSDSIGKWVTQQEAYAAVKASSDGKLKDSSLRKPSMPTVQSTSGPPPGPVVSASLNPTRSIKGAASKVVVVNK RKRDDKKSKVLTEEDKAALKAREAAKKRVEEREKGLLGLYKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	2.2	0.9463
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	4.7	0.9400
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	5.3	0.9229
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	7.1	0.9087
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	9.9	0.9198
AT4G14385			unknown protein		Lus10003559 [exp]	11.2	0.9120
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	11.7	0.9270
AT5G11500			unknown protein		Lus10037899 [exp]	11.7	0.9187
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	13.1	0.8512
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	14.3	0.8801

Compare expression of checked genes

Lus10027913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.